Acousto Aws3
root@ip-172-31-40-91:/home/ubuntu/acousto_pi/doc/tutorials/Sphere_Monopole# history
    1* apt-get install 
    2  apt-get install autoconf
    3  pwd
    4  cd ~
    5  ls
    6  cd /
    7  ls
    8  cd home
    9  ls
   10  cd ubuntu/
   11  ls
   12  cd acousto_pi/
   13  ls -lar /aclib/
   14  ls -laR /aclib/
   15  history 
   16  ./configure --with-libs=/aclib/nice
   17  nm /aclib/nice/libblas.so | grep "dgemm_"
   18  nm /aclib/nice/libblas.so
   19  ls -la /aclib/nice/libblas.so
   20  ls -la /aclib/libopenblas.so.0 
   21  ls -la /usr/lib/openblas-base/libopenblas.so.0
   22  nm /usr/lib/openblas-base/libopenblas.so.0
   23  nm -D /usr/lib/openblas-base/libopenblas.so.0
   24  nm -D /usr/lib/openblas-base/libopenblas.so.0 | grep "dgemm"
   25  size /usr/lib/openblas-base/libopenblas.so.0
   26  ls
   27  vi configure.ac
   28  cat configure.ac | grep "gfortran"
   29  autoreconf -if
   30  ./configure --with-libs=/aclib/nice
   31  ls /aclib/nice/
   32* 
   33  nm -D /usr/lib/openblas-base/libopenblas.so.0 | grep "zgegv_"
   34  ls /usr/lib/openblas-base
   35  ls -la /usr/lib/openblas-base
   36  nm -D /usr/lib/openblas-base/libopenblas.a | grep "zgegv_"
   37  find / -iname "liblapack*"
   38  mv /aclib/nice/liblapack.so /aclib/nice/_liblapack.so
   39  ln -s /etc/alternatives/liblapack.so.3gf /aclib/nice/liblapack.so
   40  nm -D /aclib/nice/liblapack.so | grep "zgegv_"
   41  mv /aclib/nice/libblas.so /aclib/nice/_libblas.so
   42  find / -iname "libblas*"
   43  ln -s /etc/alternatives/libblas.so /aclib/nice/libblas.so
   44  ./configure --with-libs=/aclib/nice
   45  sed -n '4500,4600p' ./configure
   46  sed -n '4558,4568p' ./configure
   47  vi ./configure.ac
   48  autoreconf -if
   49  vi ./configure.ac
   50  autoreconf -if
   51  ./configure --with-libs=/aclib/nice
   52  make
   53  wibble
   54  apt-get install make
   55  make
   56  make install
   57  acousto
   58  cd doc/tutorials/Sphere_Monopole/
   59  acousto -f sphere_source.cfg 
   60  ls -laR /aclib/
   61  history
Last login: Thu Jan 23 17:00:37 on ttys001
ps-MacBook-Air:~ pi$ echo - - - - - thur 23 jan - - - - - 
- - - - - thur 23 jan - - - - -
ps-MacBook-Air:~ pi$ history 
    2  autoreconf -f; clear; ./configure --enable-mpinew --enable-scalapack_new --with-libs=/usr/local/lib;
    3  autoreconf -f; clear; ./configure --enable-mpinew --enable-scalapack_new --with-libs=/usr/local/lib;
    4  autoreconf -f; clear; ./configure --enable-mpinew --enable-scalapack_new --with-libs=/usr/local/lib;
    5  autoreconf -f; clear; ./configure --enable-mpinew --enable-scalapack_new --with-libs=/usr/local/lib;
    6  autoreconf -f; clear; ./configure --enable-mpinew --enable-scalapack_new --with-libs=/usr/local/lib;
    7  autoreconf -f; clear; ./configure --enable-mpinew --enable-scalapack_new --with-libs=/usr/local/lib;
    8  autoreconf -f; clear; ./configure --enable-scalapack_new --with-libs=/usr/local/lib;
    9  autoreconf -f; clear; ./configure --enable-scalapack_new --with-libs=/usr/local/lib;make clean;make
   10  autoreconf -f; clear; ./configure --enable-scalapack_new --with-libs=/usr/local/lib;make clean;make;make install
   11  autoreconf -f; clear; ./configure --enable-scalapack_new --with-libs=/usr/local/lib;make clean;make;make install
   12  autoreconf -f; clear; ./configure --enable-scalapack_new --with-libs=/usr/local/lib;make clean;make;make install
   13  autoreconf -f; clear; ./configure --enable-scalapack_new --with-libs=/usr/local/lib;make clean;make;make install
   14  ls
   15  ls -la
   16  ls /usr/local/bin/acousto 
   17  cd /usr/local/bin/acousto 
   18  cd /usr/local/bin/
   19  ls
   20  cd /Users/pi/Downloads/acousto-1.6
   21  ls
   22  cd doc/tutorials/Sphere_Monopole/
   23  ls
   24  acousto
   25  ls
   26  acousto -f sphere_source.cfg 
   27  cd ..
   28  pwd
   29  cd ..
   30  cd ..
   31  ls
   32  clear
   33  autoreconf -f; clear; ./configure --enable-scalapack_new --enable-mpinew --with-libs=/usr/local/lib;make clean;make;make install
   34  autoreconf -f; clear; ./configure --enable-scalapack_new --enable-mpinew
   35  ls /usr/local/lib/
   36  find / -iname "scalapack"
   37  sudo find / -iname "scalapack"
   38  ls -la /usr/local/opt/
   39  ls -la /usr/local/Cellar/scalapack/
   40  ls -la /usr/local/Cellar/scalapack/2.0.2/
   41  ls -la /usr/local/Cellar/scalapack/2.0.2/lib/
   42  ln -s /usr/local/Cellar/scalapack/2.0.2/lib/libscalapack.a /usr/local/lib/libscalapack.a
   43  ls /usr/local/lib/
   44  cd ~/Downloads/acousto-1.6
   45  autoreconf -f; clear; ./configure --enable-scalapack_new --enable-mpinew
   46  autoreconf -f; clear; ./configure --enable-scalapack_new --with-libs=/usr/local/lib;make clean;make;make install
   47  acousto -f ./doc/tutorials/Sphere_Monopole/sphere_source.cfg 
   48  cd doc/tutorials/Sphere_Monopole/
   49  acousto -f sphere_source.cfg 
   50  cd ..
   51  ls
   52  cd ImpedSphere_PlaneWave/
   53  ls
   54  acousto -f sphere_pw.cfg 
   55  ln -s /usr/local/Cellar/openblas/0.2.8/lib/libopenblas.dylib /usr/local/lib/libopenblas.dylib
   56  ls -la /usr/local/lib/
   57  cd /usr/local/lib/
   58  ls
   59  mv libblas.a _libblas.a
   60  mv liblapack.a _liblapack.a
   61  ln -s libopenblas.dylib libblas.dylib
   62  ln -s libopenblas.dylib liblapack.dylib
   63  cd ~/Downloads/acousto-1.6
   64  autoreconf -f; clear; ./configure --enable-scalapack_new --with-libs=/usr/local/lib
   65  autoreconf -f; clear; ./configure --enable-scalapack_new --with-libs=/usr/local/lib;make clean;make;make install
   66  cd doc/tutorials/Sphere_Monopole/
   67  ls
   68  acousto -f sphere_source.cfg 
   69  ls -las
   70  finder
   71  autoreconf -f; clear; ./configure --enable-scalapack_new --with-libs=/usr/local/lib
   72  cd ../../..
   73  autoreconf -f; clear; ./configure --enable-scalapack_new --with-libs=/usr/local/lib
   74  mkdir tmp_build
   75  autoreconf -f; clear; ./configure --enable-scalapack_new --with-libs=/usr/local/lib
   76  rmdir tmp_build/
   77  autoreconf -f; clear; ./configure --enable-scalapack_new --with-libs=/usr/local/lib
   78  autoreconf -f; clear; ./configure --enable-scalapack_new --with-libs=/usr/local/lib
   79  autoreconf -f; clear; ./configure --enable-scalapack_new --with-libs=/usr/local/lib
   80  autoreconf -if; clear; ./configure --enable-scalapack_new --with-libs=/usr/local/lib;make clean;make;make install
   81  ls -lat
   82  mkdir tmp_build
   83  cd tmp_build/
   84  autoreconf -if; clear; ../configure --enable-scalapack_new --with-libs=/usr/local/lib;make clean;make;make install
   85  cd ..
   86  make distclean
   87  cd tmp_build/
   88  make distclean; autoreconf -if; clear; ../configure --enable-scalapack_new --with-libs=/usr/local/lib;make clean;make;make install
   89  ls
   90  ls src/
   91  cd ..
   92  ls
   93  pwd
   94  make distclean
   95  ls
   96  mkdir m4
   97  mv aclocal.m4 m4
   98  cd m4
   99  cat "foo" > bar
  100  echo "foo" > bar
  101  cat bar
  102  echo "make sure this folder is not empty, as some related technologies have trouble with an empty folder e.g. git" > NOTES
  103  rm bar
  104  ls
  105  cd ..
  106  grep -r ROBODOC .
  107  ls
  108  ls ./m4
  109  ls ./aux_build/
  110  ls ./tmp_build/
  111  cd tmp_build/
  112  make distclean; autoreconf -if; clear; ../configure --enable-scalapack_new --with-libs=/usr/local/lib;make clean;make;make install
  113  acousto
  114  make distclean
  115  ls ..
  116  rm ../aclocal.m4 
  117  ls ..
  118  cd ..
  119  make distclean
  120  make distclean
  121  cd tmp_build/
  122  make distclean; autoreconf -if; clear; ../configure --enable-scalapack_new --with-libs=/usr/local/lib;make clean;make;make install
  123  cd .
  124  cd ..
  125  autoreconf -if
  126  ls
  127  autoreconf -if
  128  autoreconf -if
  129  autoreconf -if
  130  autoreconf -if
  131  cd tmp_build/
  132  make distclean; autoreconf -if; clear; ../configure --enable-scalapack_new --with-libs=/usr/local/lib;make clean;make;make install
  133  make distclean
  134  make maintainerclean
  135  ls
  136  cd ..
  137  ls
  138  cd doc/tutorials/
  139  cd Sphere_Monopole/
  140  ls
  141  cat acousto.chief.mesh 
  142  cat acousto.mics1.5.mesh 
  143  cat acousto.sources 
  144  cat sphere_source
  145  cat sphere_source.cfg 
  146  mpirun -np 1 acousto -f sphere_source.cfg 
  147  cd ...
  148  ls
  149  cd ..
  150  ls
  151  cd Brass_FreqResponse/
  152  ls
  153  mpirun -np 1 acousto -f brass_fresp.cfg 
  154  cd ..
  155  cd ..
  156  cd ..
  157  ls
  158  cd doc/tutorials/Brass_FreqResponse/
  159  ls
  160  mpirun -np 1 acousto -f brass_fresp.cfg 
  161  history
  162  cd Downloads/acousto-1.6
  163  ls
  164  ls m4/
  165  cat m4/NOTES 
  166  ls aux_build/
  167  cat src/Makefile.am 
  168  cat Makefile.am 
  169  cd Downloads/acousto-1.6/doc/tutorials/Brass_FreqResponse/
  170  ls
  171  ls -la
  172  cat acousto.custombc.func.dat 
  173  cat acousto.custombc.gamma.dat 
  174  cat acousto.custombc.gvec.dat 
  175  cat acousto.custombc.lambda.dat 
  176  ls .*
  177  pwd
  178  ls -la
  179  $PATH
  180  python --version
  181  which python
  182  brew install python
  183  python --version
  184  which python
  185  sudo find / -iname "python"
  186  ls -la /usr/bin/python
  187  ls -la /usr/local/bin/python
  188  which python
  189  ls -la /usr/local/share/python
  190  pip install numpy
  191  pip install scipy
  192  python
  193  pip install matplotlib
  194  pip uninstall numpy
  195  pip uninstall scipy
  196  brew install numpy --with-openblas
  197  brew tap homebrew/science
  198  brew tap samueljohn/python
  199   brew update && brew upgrade
  200   brew install openblas
  201   brew install numpy --with-openblas
  202   brew install numpy --with-openblas
  203   brew install scipy --with-openblas
  204  cd Downloads/acousto-1.6
  205  ls -lat
  206   pip install pandas nltk matplotlib sympy q
  207  ln -s ~/Dev/Processing ~/Documents/Processing
  208  ln -s ~/Dev/HRTF/acousto-1.6/blender/io_mesh_acousto_pi /Applications/blender.app/Contents/MacOS/2.69/scripts/addons/io_mesh_acousto_pi
  209  homebrew --hlep
  210  homebrew --help
  211  homebrew
  212  brew --help
  213  brew info python
  214  cd Dev
  215  ls
  216  mkdir BlenderAddons
  217  mkdir /Applications/blender.app/Contents/MacOS/2.69/scripts/addons/pi
  218  pwd
  219  ln -s /Applications/blender.app/Contents/MacOS/2.69/scripts/addons/pi blenderAddons
  220  ls -la
  221  ls BlenderAddons/
  222  ls BlenderAddons/pi/
  223  ln -s /Applications/blender.app/Contents/MacOS/2.69/scripts/addons/pi BlenderAddons
  224  ln -s /Applications/blender.app/Contents/MacOS/2.69/scripts/addons/pi blenderAddons
  225  ls -la
  226  cd blenderAddons
  227  pwd
  228  cd ..
  229  ls
  230  rm blenderAddons
  231  ls -la
  232  rmdir /Applications/blender.app/Contents/MacOS/2.69/scripts/addons/pi
  233  mkdir blenderAddons
  234  ln -s blenderAddons/ /Applications/blender.app/Contents/MacOS/2.69/scripts/addons/pi
  235  ls -la
  236  cd blenderAddons/
  237  ls
  238  touch foo.py
  239  touch __init__.py
  240  blender
  241  /Applications/blender.app/Contents/MacOS/blender 
  242  /Applications/blender.app/Contents/MacOS/blender 
  243  ls ~/Dev/blenderAddons/pointcloud.py
  244  history 
  245  ln -s /Applications/blender.app/Contents/MacOS/2.69/scripts/addons/pi/
  246  mkdir /Applications/blender.app/Contents/MacOS/2.69/scripts/addons/pi
  247  rmdir /Applications/blender.app/Contents/MacOS/2.69/scripts/addons/pi
  248  mkdir /Applications/blender.app/Contents/MacOS/2.69/scripts/addons/pi ~/Dev/blenderAddons/ 
  249  cd /Applications/blender.app/Contents/MacOS/2.69/scripts/addons/pi
  250  ln -s ~/Dev/blenderAddons
  251  ls
  252  cd ..
  253  mv pi _pi
  254  ln -s ~/Dev/blenderAddons ./pi
  255  cd pi
  256  touch foo
  257  cd ~/Dev/blenderAddons/
  258  ls
  259  ls -la
  260  ls
  261  ls *acou*
  262  ls -la
  263  mkdir tst
  264  cd tst
  265  touch A
  266  ls
  267  mkdir fldr
  268  cd fldr
  269  cd ..
  270  echo "hello" > A
  271  cat A
  272  cd fldr
  273  ls
  274  ln -s ../A
  275  ls -la
  276  cd ..
  277  pwd
  278  cd ..
  279  rmdir tst
  280  rm -rf tst
  281  ls
  282  cd Dev/
  283  ln -s ./HRTF/acousto-1.6 ac
  284  ls -la
  285  cd ac
  286  ls
  287  python freq2imp.py 
  288  ls
  289  chmod a+x freq2imp.py 
  290  ./freq2imp.py foo bar
  291  ./freq2imp.py foo bar
  292  cd doc/tutorials/Sphere_Monopole/
  293  ls
  294  ls -la
  295  cd pro-ch0-pc1-gmr-2014-01-17/
  296  ls
  297  cat pro-ch0-pc1-gmr-mics.wrl 
  298  cat pro-ch0-pc1-gmr-mics-171.5000Hz.out 
  299  pwd
  300  cat pro-ch0-pc1-gmr-mics-171.5000Hz.out > ../../../../tst.txt
  301  cd ../../../..
  302  pwd
  303  ls
  304  ./freq2imp.py tst.txt 
  305  ./freq2imp.py tst.txt 
  306  ./freq2imp.py tst.txt 
  307  ./freq2imp.py tst.txt 
  308  ./freq2imp.py tst.txt 
  309  ./freq2imp.py tst.txt 
  310  ./freq2imp.py tst.txt 
  311  ./freq2imp.py tst.txt 
  312  ./freq2imp.py tst.txt 
  313  ./freq2imp.py tst.txt 
  314  ./freq2imp.py tst.txt 
  315  python
  316  ./freq2imp.py tst.txt tst_out.txt
  317  ./freq2imp.py tst.txt tst_out.txt
  318  ./freq2imp.py tst.txt tst_out.txt
  319  ./freq2imp.py tst.txt tst_out.txt
  320  ./freq2imp.py tst.txt tst_out.txt
  321  ./freq2imp.py tst.txt tst_out.txt
  322  ./freq2imp.py tst.txt tst_out.txt
  323  cat tst_out.txt 
  324  cat tst_out.txt 
  325  cat tst_out.txt 
  326  cat tst_out.txt 
  327  cat tst_out.txt 
  328  ./freq2imp.py tst.txt tst_out.txt
  329  ./freq2imp.py tst.txt tst_out.txt
  330  ./freq2imp.py tst.txt tst_out.txt
  331  ./freq2imp.py tst.txt tst_out.txt
  332  ./freq2imp.py tst.txt tst_out.txt
  333  ./freq2imp.py tst.txt tst_out.txt
  334  ./freq2imp.py tst.txt tst_out.txt
  335  ./freq2imp.py tst.txt tst_out.txt
  336  ./freq2imp.py tst.txt tst_out.txt
  337  ./freq2imp.py tst.txt tst_out.txt
  338  ./freq2imp.py tst.txt tst_out.txt
  339  ./freq2imp.py tst.txt tst_out.txt
  340  ./freq2imp.py tst.txt tst_out.txt
  341  ./freq2imp.py tst.txt tst_out.txt
  342  ./freq2imp.py tst.txt tst_out.txt
  343  ./freq2imp.py tst.txt tst_out.txt
  344  ./freq2imp.py tst.txt tst_out.txt
  345  ./freq2imp.py tst.txt tst_out.txt
  346  ./freq2imp.py tst.txt tst_out.txt
  347  ./freq2imp.py tst.txt tst_out.txt
  348  ./freq2imp.py tst.txt tst_out.txt
  349  ./freq2imp.py tst.txt tst_out.txt
  350  python
  351  ./freq2imp.py tst.txt tst_out.txt
  352  ./freq2imp.py tst.txt tst_out.txt
  353  ./freq2imp.py tst.txt tst_out.txt
  354  ./freq2imp.py tst.txt tst_out.txt
  355  ./freq2imp.py tst.txt tst_out.txt
  356  ./freq2imp.py tst.txt tst_out.txt
  357  ./freq2imp.py tst.txt tst_out.txt
  358  ./freq2imp.py tst.txt tst_out.txt
  359  python
  360  ./freq2imp.py tst.txt tst_out.txt
  361  ./freq2imp.py tst.txt tst_out.txt
  362  python
  363  ./freq2imp.py tst.txt tst_out.txt
  364  ./freq2imp.py tst.txt tst_out.txt
  365  ./freq2imp.py tst.txt tst_out.txt
  366  ./freq2imp.py tst.txt tst_out.txt
  367  ./freq2imp.py tst.txt tst_out.txt
  368  ./freq2imp.py tst.txt tst_out.txt
  369  ./freq2imp.py tst.txt tst_out.txt
  370  ./freq2imp.py tst.txt tst_out.txt
  371  ./freq2imp.py tst.txt tst_out.txt
  372  ./freq2imp.py tst.txt tst_out.txt
  373  ./freq2imp.py tst.txt tst_out.txt
  374  ./freq2imp.py tst.txt tst_out.txt
  375  ./freq2imp.py tst.txt tst_out.txt
  376  ./freq2imp.py tst.txt tst_out.txt
  377  ./freq2imp.py tst.txt tst_out.txt
  378  ./freq2imp.py tst.txt tst_out.txt
  379  ./freq2imp.py tst.txt tst_out.txt
  380  ./freq2imp.py tst.txt tst_out.txt
  381  ./freq2imp.py tst.txt tst_out.txt
  382  ./freq2imp.py tst.txt tst_out.txt
  383  ./freq2imp.py tst.txt tst_out.txt
  384  ./freq2imp.py tst.txt tst_out.txt
  385  ./freq2imp.py tst.txt tst_out.txt
  386  python
  387  python
  388  ./freq2imp.py tst.txt tst_out.txt
  389  ./freq2imp.py tst.txt tst_out.txt
  390  ./freq2imp.py tst.txt tst_out.txt
  391  ./freq2imp.py tst.txt tst_out.txt
  392  ./freq2imp.py tst.txt tst_out.txt
  393  ls -lat
  394  sudo find / -iname "*vlc*
  395  123
  396  sudo find / -iname "*vlc*"
  397  sudo find / -iname "VLC.app"
  398  cd Dev
  399  pwd
  400  cd ac
  401  cd ../../Desktop 
  402  cd AcoustoExport/
  403  ls
  404  acousto
  405  acousto -f pi.cfg 
  406  acousto -f pi.cfg 
  407  clear
  408  acousto -f pi.cfg 
  409  mpirun -np1 gdb acousto
  410  mpirun -np 1 gdb acousto
  411  xcode-select --install
  412  xcode-select --install
  413  ping google.com
  414  xcode-select --install
  415  gdb
  416  sudo find / -iname "*gdb*"
  417  ls -la /usr/local/share/
  418  xcode-select --install
  419  xcode-select --install
  420  xcode-select --install
  421  xcode-select --install
  422  /usr/bin/xcodebuild -version
  423  mpirun -np 1 lldb acousto
  424  xcode-select -p
  425  gcc
  426  which gcc
  427  gcc -version
  428  gcc -version
  429  gcc --version
  430  gcc --version
  431  gcc --version
  432  which gcc
  433  ls -la /usr/bin/
  434  cd Desktop/
  435  cd A
  436  cd AcoustoExport
  437  ls
  438  mpirun -np 1 acousto -f pi.cfg
  439  cd ~/ac
  440  cd ~/Dev/ac
  441  cd doc/tutorials/Brass_FreqResponse/
  442  ls
  443  cat brass_fresp.cfg 
  444  mpirun -np 1 acousto -f brass_fresp.cfg 
  445  mpirun -np 1 acousto -f brass_fresp.cfg 
  446  ssh
  447  cd Downloads/awscli-bundle
  448  ls
  449  cd ..
  450  sudo ./awscli-bundle/install -i /usr/local/aws -b /usr/local/bin/aws
  451  aws --version
  452  ec2-get-console-output i-4b339a42
  453  pwd
  454  ls *.pem
  455  chmod 400 EC2_free_keypair.pem 
  456  ssh -i EC2_free_keypair.pem ubuntu@ec2-54-213-58-111.us-west-2.compute.amazonaws.com
  457  pwd
  458  lw
  459  ls
  460  ssh -i ./EC2_free_keypair.pem ubuntu@ec2-54-213-58-111.us-west-2.compute.amazonaws.com
  461  ssh -v -i ./EC2_free_keypair.pem ubuntu@ec2-54-213-58-111.us-west-2.compute.amazonaws.com
  462  ssh -v -i ./EC2_free_keypair.pem ec2-user@ec2-54-213-58-111.us-west-2.compute.amazonaws.com
  463  cd Downloads/
  464  ssh -v -i ./EC2_free_keypair.pem ec2-user@ec2-54-213-58-111.us-west-2.compute.amazonaws.com
  465  ssh -v -i ./EC2_free_keypair.pem ec2-user@ec2-54-201-110-232.us-west-2.compute.amazonaws.com
  466  ssh -v -i ./EC2_free_keypair.pem sudo apt-get install gfortran
  467  ssh -v -i ./EC2_free_keypair.pem ubuntu@ec2-54-200-125-171.us-west-2.compute.amazonaws.com
  468  pwd
  469  cd ../Desktop/
  470  scp -r acousto-1.6 ubuntu@ec2-54-200-125-171.us-west-2.compute.amazonaws.com:/home/ubuntu
  471  scp -r -i ~/Downloads/EC2_free_keypair.pem acousto-1.6 ubuntu@ec2-54-200-125-171.us-west-2.compute.amazonaws.com:/home/ubuntu
  472  history 
  473  xxx_scp -r -i ~/Downloads/EC2_free_keypair.pem acousto-1.6 ubuntu@ec2-54-200-125-171.us-west-2.compute.amazonaws.com:/home/ubuntu
  474  history 
  475  ssh -v -i ./EC2_free_keypair.pem ubuntu@ec2-54-200-125-171.us-west-2.compute.amazonaws.com
  476  ssh -v -i ~/Downloads/EC2_free_keypair.pem ubuntu@ec2-54-200-125-171.us-west-2.compute.amazonaws.com
  477  history 
  478  ssh -v -i ~/Downloads/EC2_free_keypair.pem ubuntu@ec2-54-200-125-171.us-west-2.compute.amazonaws.com
  479  ssh -v -i ~/Downloads/EC2_free_keypair.pem ec2-54-201-194-99.us-west-2.compute.amazonaws.com
  480  ssh -v -i ~/Downloads/EC2_free_keypair.pem ubuntu@ec2-54-201-194-99.us-west-2.compute.amazonaws.com
  481  ssh -v -i ~/Downloads/EC2_free_keypair.pem ubuntu@ec2-54-201-194-99.us-west-2.compute.amazonaws.com
  482  scp -r -i ~/Downloads/EC2_free_keypair.pem ~/Desktop/acousto-1.6 ubuntu@ec2-54-201-194-99.us-west-2.compute.amazonaws.com:/home/ubuntu
  483  ssh -v -i ~/Downloads/EC2_free_keypair.pem ubuntu@ec2-54-201-194-99.us-west-2.compute.amazonaws.com
  484  echo "ServerAliveInterval 1800" >> ~/.ssh/config 
  485  ssh -v -i ~/Downloads/EC2_free_keypair.pem ubuntu@ec2-54-201-194-99.us-west-2.compute.amazonaws.com
  486  ssh -v -i ~/Downloads/EC2_free_keypair.pem ubuntu@ec2-54-201-194-99.us-west-2.compute.amazonaws.com
  487  scp -r -i ~/Downloads/EC2_free_keypair.pem ~/Dev/HRTF/acousto_pi ubuntu@ec2-54-201-194-99.us-west-2.compute.amazonaws.com:/home/ubuntu
  488  history
  489  ssh -v -i ~/Downloads/EC2_free_keypair.pem ubuntu@ec2-54-201-194-99.us-west-2.compute.amazonaws.com
  490  ssh -v -i ~/Downloads/EC2_free_keypair.pem ubuntu@ec2-54-201-194-99.us-west-2.compute.amazonaws.com
  491  ssh -v -i ~/Downloads/EC2_free_keypair.pem ubuntu@ec2-54-201-194-99.us-west-2.compute.amazonaws.com
  492  pwd
  493  ls
  494  ssh -v -i ~/Downloads/EC2_free_keypair.pem ubuntu@ec2-54-201-194-99.us-west-2.compute.amazonaws.com
  495  cd Dev
  496  ls
  497  pwd
  498  cd HRTF/acousto_pi/
  499  vi configure.ac
  500  echo - - - - - thur 23 jan - - - - - 
  501  history 
ps-MacBook-Air:~ pi$ cat ~/.ssh/config 
ServerAliveInterval 1800
ps-MacBook-Air:~ pi$ echo "ServerAliveInterval 60" >> ~/.ssh/config 
ps-MacBook-Air:~ pi$ echo "ServerAliveInterval 60" > ~/.ssh/config 
ps-MacBook-Air:~ pi$ cat ~/.ssh/config 
ServerAliveInterval 60
ps-MacBook-Air:~ pi$ ssh -v -i ~/Downloads/EC2_free_keypair.pem ubuntu@ec2-54-200-77-138.us-west-2.compute.amazonaws.com
OpenSSH_6.2p2, OSSLShim 0.9.8r 8 Dec 2011
debug1: Reading configuration data /Users/pi/.ssh/config
debug1: Reading configuration data /etc/ssh_config
debug1: /etc/ssh_config line 20: Applying options for *
debug1: Connecting to ec2-54-200-77-138.us-west-2.compute.amazonaws.com [54.200.77.138] port 22.
debug1: Connection established.
debug1: identity file /Users/pi/Downloads/EC2_free_keypair.pem type -1
debug1: identity file /Users/pi/Downloads/EC2_free_keypair.pem-cert type -1
debug1: Enabling compatibility mode for protocol 2.0
debug1: Local version string SSH-2.0-OpenSSH_6.2
debug1: Remote protocol version 2.0, remote software version OpenSSH_5.9p1 Debian-5ubuntu1.1
debug1: match: OpenSSH_5.9p1 Debian-5ubuntu1.1 pat OpenSSH_5*
debug1: SSH2_MSG_KEXINIT sent
debug1: SSH2_MSG_KEXINIT received
debug1: kex: server->client aes128-ctr hmac-md5 none
debug1: kex: client->server aes128-ctr hmac-md5 none
debug1: SSH2_MSG_KEX_DH_GEX_REQUEST(1024<1024<8192) sent
debug1: expecting SSH2_MSG_KEX_DH_GEX_GROUP
debug1: SSH2_MSG_KEX_DH_GEX_INIT sent
debug1: expecting SSH2_MSG_KEX_DH_GEX_REPLY
debug1: Server host key: RSA b6:31:33:a2:15:e8:64:e7:ff:62:26:b3:e3:99:1b:06
The authenticity of host 'ec2-54-200-77-138.us-west-2.compute.amazonaws.com (54.200.77.138)' can't be established.
RSA key fingerprint is b6:31:33:a2:15:e8:64:e7:ff:62:26:b3:e3:99:1b:06.
Are you sure you want to continue connecting (yes/no)? yes
Warning: Permanently added 'ec2-54-200-77-138.us-west-2.compute.amazonaws.com,54.200.77.138' (RSA) to the list of known hosts.
debug1: ssh_rsa_verify: signature correct
debug1: SSH2_MSG_NEWKEYS sent
debug1: expecting SSH2_MSG_NEWKEYS
debug1: SSH2_MSG_NEWKEYS received
debug1: Roaming not allowed by server
debug1: SSH2_MSG_SERVICE_REQUEST sent
debug1: SSH2_MSG_SERVICE_ACCEPT received
debug1: Authentications that can continue: publickey
debug1: Next authentication method: publickey
debug1: Trying private key: /Users/pi/Downloads/EC2_free_keypair.pem
debug1: read PEM private key done: type RSA
debug1: Authentication succeeded (publickey).
Authenticated to ec2-54-200-77-138.us-west-2.compute.amazonaws.com ([54.200.77.138]:22).
debug1: channel 0: new [client-session]
debug1: Requesting no-more-sessions@openssh.com
debug1: Entering interactive session.
debug1: Sending environment.
debug1: Sending env LANG = en_GB.UTF-8
Welcome to Ubuntu 12.04.3 LTS (GNU/Linux 3.2.0-54-virtual x86_64)

 * Documentation:  https://help.ubuntu.com/

  System information as of Thu Jan 23 22:43:46 UTC 2014

  System load:  0.08              Processes:           58
  Usage of /:   11.1% of 7.87GB   Users logged in:     0
  Memory usage: 6%                IP address for eth0: 172.31.40.91
  Swap usage:   0%

  Graph this data and manage this system at https://landscape.canonical.com/

  Get cloud support with Ubuntu Advantage Cloud Guest:
    http://www.ubuntu.com/business/services/cloud

  Use Juju to deploy your cloud instances and workloads:
    https://juju.ubuntu.com/#cloud-precise

0 packages can be updated.
0 updates are security updates.

The programs included with the Ubuntu system are free software;
the exact distribution terms for each program are described in the
individual files in /usr/share/doc/*/copyright.

Ubuntu comes with ABSOLUTELY NO WARRANTY, to the extent permitted by
applicable law.

To run a command as administrator (user "root"), use "sudo <command>".
See "man sudo_root" for details.

ubuntu@ip-172-31-40-91:~$ 
ubuntu@ip-172-31-40-91:~$ apt-get update
E: Could not open lock file /var/lib/apt/lists/lock - open (13: Permission denied)
E: Unable to lock directory /var/lib/apt/lists/
E: Could not open lock file /var/lib/dpkg/lock - open (13: Permission denied)
E: Unable to lock the administration directory (/var/lib/dpkg/), are you root?
ubuntu@ip-172-31-40-91:~$ sudo apt-get update
Get:1 http://us-west-2.ec2.archive.ubuntu.com precise Release.gpg [198 B]
Get:2 http://us-west-2.ec2.archive.ubuntu.com precise-updates Release.gpg [198 B]
Get:3 http://us-west-2.ec2.archive.ubuntu.com precise Release [49.6 kB]
Get:4 http://us-west-2.ec2.archive.ubuntu.com precise-updates Release [49.6 kB]        
Get:5 http://us-west-2.ec2.archive.ubuntu.com precise/main Sources [934 kB]                            
Get:6 http://us-west-2.ec2.archive.ubuntu.com precise/universe Sources [5,019 kB]                   
Get:7 http://security.ubuntu.com precise-security Release.gpg [198 B]                                        
Get:8 http://security.ubuntu.com precise-security Release [49.6 kB]                                          
Get:9 http://us-west-2.ec2.archive.ubuntu.com precise/main amd64 Packages [1,273 kB]       
Get:10 http://us-west-2.ec2.archive.ubuntu.com precise/universe amd64 Packages [4,786 kB] 
Get:11 http://security.ubuntu.com precise-security/main Sources [96.7 kB]                  
Get:12 http://us-west-2.ec2.archive.ubuntu.com precise/main i386 Packages [1,274 kB]          
Get:13 http://us-west-2.ec2.archive.ubuntu.com precise/universe i386 Packages [4,796 kB]    
Get:14 http://security.ubuntu.com precise-security/universe Sources [30.5 kB]              
Get:15 http://security.ubuntu.com precise-security/main amd64 Packages [357 kB]               
Get:16 http://us-west-2.ec2.archive.ubuntu.com precise/main TranslationIndex [3,706 B]       
Get:17 http://us-west-2.ec2.archive.ubuntu.com precise/universe TranslationIndex [2,922 B]          
Get:18 http://us-west-2.ec2.archive.ubuntu.com precise-updates/main Sources [448 kB]               
Get:19 http://us-west-2.ec2.archive.ubuntu.com precise-updates/universe Sources [101 kB]
Get:20 http://us-west-2.ec2.archive.ubuntu.com precise-updates/main amd64 Packages [744 kB]
Get:21 http://us-west-2.ec2.archive.ubuntu.com precise-updates/universe amd64 Packages [231 kB]
Get:22 http://us-west-2.ec2.archive.ubuntu.com precise-updates/main i386 Packages [768 kB]
Get:23 http://us-west-2.ec2.archive.ubuntu.com precise-updates/universe i386 Packages [236 kB]
Get:24 http://us-west-2.ec2.archive.ubuntu.com precise-updates/main TranslationIndex [3,564 B]
Get:25 http://us-west-2.ec2.archive.ubuntu.com precise-updates/universe TranslationIndex [2,850 B] 
Get:26 http://us-west-2.ec2.archive.ubuntu.com precise/main Translation-en [726 kB]
Get:27 http://us-west-2.ec2.archive.ubuntu.com precise/universe Translation-en [3,341 kB]      
Get:28 http://security.ubuntu.com precise-security/universe amd64 Packages [90.1 kB]             
Hit http://us-west-2.ec2.archive.ubuntu.com precise-updates/main Translation-en                      
Hit http://us-west-2.ec2.archive.ubuntu.com precise-updates/universe Translation-en
Get:29 http://security.ubuntu.com precise-security/main i386 Packages [377 kB]
Get:30 http://security.ubuntu.com precise-security/universe i386 Packages [94.5 kB]
Get:31 http://security.ubuntu.com precise-security/main TranslationIndex [74 B]
Get:32 http://security.ubuntu.com precise-security/universe TranslationIndex [73 B]
Get:33 http://security.ubuntu.com precise-security/main Translation-en [168 kB]
Get:34 http://security.ubuntu.com precise-security/universe Translation-en [56.1 kB]
Fetched 26.1 MB in 19s (1,372 kB/s)                                                                                                               
Reading package lists... Done
ubuntu@ip-172-31-40-91:~$ 
ubuntu@ip-172-31-40-91:~$ 
ubuntu@ip-172-31-40-91:~$ 
ubuntu@ip-172-31-40-91:~$ sudo apt-get install gfortran
Reading package lists... Done
Building dependency tree       
Reading state information... Done
The following extra packages will be installed:
  binutils cpp cpp-4.6 gcc gcc-4.6 gfortran-4.6 libc-bin libc-dev-bin libc6 libc6-dev libgfortran3 libgomp1 libmpc2 libmpfr4 libquadmath0
  linux-libc-dev manpages-dev
Suggested packages:
  binutils-doc cpp-doc gcc-4.6-locales gcc-multilib make autoconf automake1.9 libtool flex bison gdb gcc-doc gcc-4.6-multilib libmudflap0-4.6-dev
  gcc-4.6-doc libgcc1-dbg libgomp1-dbg libquadmath0-dbg libmudflap0-dbg binutils-gold gfortran-multilib gfortran-doc gfortran-4.6-multilib
  gfortran-4.6-doc libgfortran3-dbg glibc-doc
The following NEW packages will be installed:
  binutils cpp cpp-4.6 gcc gcc-4.6 gfortran gfortran-4.6 libc-dev-bin libc6-dev libgfortran3 libgomp1 libmpc2 libmpfr4 libquadmath0
  linux-libc-dev manpages-dev
The following packages will be upgraded:
  libc-bin libc6
2 upgraded, 16 newly installed, 0 to remove and 61 not upgraded.
Need to get 32.8 MB of archives.
After this operation, 71.4 MB of additional disk space will be used.
Do you want to continue [Y/n]? y
Get:1 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise-updates/main libc-bin amd64 2.15-0ubuntu10.5 [1,182 kB]
Get:2 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise-updates/main libc6 amd64 2.15-0ubuntu10.5 [4,654 kB]
Get:3 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main libquadmath0 amd64 4.6.3-1ubuntu5 [126 kB]
Get:4 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main libgfortran3 amd64 4.6.3-1ubuntu5 [357 kB]
Get:5 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main libgomp1 amd64 4.6.3-1ubuntu5 [25.5 kB]
Get:6 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main libmpfr4 amd64 3.1.0-3ubuntu2 [201 kB]
Get:7 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main libmpc2 amd64 0.9-4 [39.5 kB]
Get:8 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise-updates/main binutils amd64 2.22-6ubuntu1.1 [2,638 kB]
Get:9 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main cpp-4.6 amd64 4.6.3-1ubuntu5 [4,836 kB]
Get:10 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main cpp amd64 4:4.6.3-1ubuntu5 [27.6 kB]
Get:11 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main gcc-4.6 amd64 4.6.3-1ubuntu5 [7,572 kB]
Get:12 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main gcc amd64 4:4.6.3-1ubuntu5 [5,114 B]
Get:13 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise-updates/main libc-dev-bin amd64 2.15-0ubuntu10.5 [83.9 kB]
Get:14 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise-updates/main linux-libc-dev amd64 3.2.0-58.88 [863 kB]
Get:15 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise-updates/main libc6-dev amd64 2.15-0ubuntu10.5 [2,941 kB]
Get:16 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main gfortran-4.6 amd64 4.6.3-1ubuntu5 [5,579 kB]
Get:17 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main gfortran amd64 4:4.6.3-1ubuntu5 [1,206 B]
Get:18 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main manpages-dev all 3.35-0.1ubuntu1 [1,671 kB]
Fetched 32.8 MB in 2s (14.7 MB/s)    
Preconfiguring packages ...
(Reading database ... 47490 files and directories currently installed.)
Preparing to replace libc-bin 2.15-0ubuntu10.4 (using .../libc-bin_2.15-0ubuntu10.5_amd64.deb) ...
Unpacking replacement libc-bin ...
Processing triggers for initramfs-tools ...
update-initramfs: Generating /boot/initrd.img-3.2.0-54-virtual
Processing triggers for man-db ...
Setting up libc-bin (2.15-0ubuntu10.5) ...
(Reading database ... 47490 files and directories currently installed.)
Preparing to replace libc6 2.15-0ubuntu10.4 (using .../libc6_2.15-0ubuntu10.5_amd64.deb) ...
Unpacking replacement libc6 ...
Setting up libc6 (2.15-0ubuntu10.5) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
Selecting previously unselected package libquadmath0.
(Reading database ... 47490 files and directories currently installed.)
Unpacking libquadmath0 (from .../libquadmath0_4.6.3-1ubuntu5_amd64.deb) ...
Selecting previously unselected package libgfortran3.
Unpacking libgfortran3 (from .../libgfortran3_4.6.3-1ubuntu5_amd64.deb) ...
Selecting previously unselected package libgomp1.
Unpacking libgomp1 (from .../libgomp1_4.6.3-1ubuntu5_amd64.deb) ...
Selecting previously unselected package libmpfr4.
Unpacking libmpfr4 (from .../libmpfr4_3.1.0-3ubuntu2_amd64.deb) ...
Selecting previously unselected package libmpc2.
Unpacking libmpc2 (from .../libmpc2_0.9-4_amd64.deb) ...
Selecting previously unselected package binutils.
Unpacking binutils (from .../binutils_2.22-6ubuntu1.1_amd64.deb) ...
Selecting previously unselected package cpp-4.6.
Unpacking cpp-4.6 (from .../cpp-4.6_4.6.3-1ubuntu5_amd64.deb) ...
Selecting previously unselected package cpp.
Unpacking cpp (from .../cpp_4%3a4.6.3-1ubuntu5_amd64.deb) ...
Selecting previously unselected package gcc-4.6.
Unpacking gcc-4.6 (from .../gcc-4.6_4.6.3-1ubuntu5_amd64.deb) ...
Selecting previously unselected package gcc.
Unpacking gcc (from .../gcc_4%3a4.6.3-1ubuntu5_amd64.deb) ...
Selecting previously unselected package libc-dev-bin.
Unpacking libc-dev-bin (from .../libc-dev-bin_2.15-0ubuntu10.5_amd64.deb) ...
Selecting previously unselected package linux-libc-dev.
Unpacking linux-libc-dev (from .../linux-libc-dev_3.2.0-58.88_amd64.deb) ...
Selecting previously unselected package libc6-dev.
Unpacking libc6-dev (from .../libc6-dev_2.15-0ubuntu10.5_amd64.deb) ...
Selecting previously unselected package gfortran-4.6.
Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-1ubuntu5_amd64.deb) ...
Selecting previously unselected package gfortran.
Unpacking gfortran (from .../gfortran_4%3a4.6.3-1ubuntu5_amd64.deb) ...
Selecting previously unselected package manpages-dev.
Unpacking manpages-dev (from .../manpages-dev_3.35-0.1ubuntu1_all.deb) ...
Processing triggers for man-db ...
Setting up libquadmath0 (4.6.3-1ubuntu5) ...
Setting up libgfortran3 (4.6.3-1ubuntu5) ...
Setting up libgomp1 (4.6.3-1ubuntu5) ...
Setting up libmpfr4 (3.1.0-3ubuntu2) ...
Setting up libmpc2 (0.9-4) ...
Setting up binutils (2.22-6ubuntu1.1) ...
Setting up cpp-4.6 (4.6.3-1ubuntu5) ...
Setting up cpp (4:4.6.3-1ubuntu5) ...
Setting up gcc-4.6 (4.6.3-1ubuntu5) ...
Setting up gcc (4:4.6.3-1ubuntu5) ...
Setting up libc-dev-bin (2.15-0ubuntu10.5) ...
Setting up linux-libc-dev (3.2.0-58.88) ...
Setting up libc6-dev (2.15-0ubuntu10.5) ...
Setting up gfortran-4.6 (4.6.3-1ubuntu5) ...
Setting up gfortran (4:4.6.3-1ubuntu5) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up manpages-dev (3.35-0.1ubuntu1) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
ubuntu@ip-172-31-40-91:~$ 
ubuntu@ip-172-31-40-91:~$ 
ubuntu@ip-172-31-40-91:~$ 
ubuntu@ip-172-31-40-91:~$ sudo apt-get install libconfig8
Reading package lists... Done
Building dependency tree       
Reading state information... Done
The following NEW packages will be installed:
  libconfig8
0 upgraded, 1 newly installed, 0 to remove and 61 not upgraded.
Need to get 21.5 kB of archives.
After this operation, 111 kB of additional disk space will be used.
Get:1 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main libconfig8 amd64 1.3.2-2ubuntu2 [21.5 kB]
Fetched 21.5 kB in 0s (443 kB/s)
Selecting previously unselected package libconfig8.
(Reading database ... 50840 files and directories currently installed.)
Unpacking libconfig8 (from .../libconfig8_1.3.2-2ubuntu2_amd64.deb) ...
Setting up libconfig8 (1.3.2-2ubuntu2) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
ubuntu@ip-172-31-40-91:~$ 
ubuntu@ip-172-31-40-91:~$ 
ubuntu@ip-172-31-40-91:~$ 
ubuntu@ip-172-31-40-91:~$ sudo apt-get install libconfig8-dev
Reading package lists... Done
Building dependency tree       
Reading state information... Done
The following extra packages will be installed:
  pkg-config
The following NEW packages will be installed:
  libconfig8-dev pkg-config
0 upgraded, 2 newly installed, 0 to remove and 61 not upgraded.
Need to get 358 kB of archives.
After this operation, 623 kB of additional disk space will be used.
Do you want to continue [Y/n]? y
Get:1 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main pkg-config amd64 0.26-1ubuntu1 [40.9 kB]
Get:2 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main libconfig8-dev amd64 1.3.2-2ubuntu2 [317 kB]
Fetched 358 kB in 0s (2,237 kB/s)   
Selecting previously unselected package pkg-config.
(Reading database ... 50847 files and directories currently installed.)
Unpacking pkg-config (from .../pkg-config_0.26-1ubuntu1_amd64.deb) ...
Selecting previously unselected package libconfig8-dev.
Unpacking libconfig8-dev (from .../libconfig8-dev_1.3.2-2ubuntu2_amd64.deb) ...
Processing triggers for man-db ...
Processing triggers for install-info ...
Setting up pkg-config (0.26-1ubuntu1) ...
Setting up libconfig8-dev (1.3.2-2ubuntu2) ...

ubuntu@ip-172-31-40-91:~$ sudo apt-get install openmpi-bin
Reading package lists... Done
Building dependency tree       
Reading state information... Done
The following extra packages will be installed:
  blcr-util libcr0 libibverbs1 libnuma1 libopenmpi1.3 libtorque2 openmpi-checkpoint openmpi-common
Suggested packages:
  blcr-dkms
The following NEW packages will be installed:
  blcr-util libcr0 libibverbs1 libnuma1 libopenmpi1.3 libtorque2 openmpi-bin openmpi-checkpoint openmpi-common
0 upgraded, 9 newly installed, 0 to remove and 61 not upgraded.
Need to get 1,823 kB of archives.
After this operation, 5,453 kB of additional disk space will be used.
Do you want to continue [Y/n]? y
Get:1 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise-updates/universe libcr0 amd64 0.8.2-15ubuntu2.1 [22.6 kB]
Get:2 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise-updates/universe blcr-util amd64 0.8.2-15ubuntu2.1 [28.5 kB]
Get:3 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main libnuma1 amd64 2.0.8~rc3-1 [23.1 kB]
Get:4 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/universe libtorque2 amd64 2.4.16+dfsg-1build1 [91.6 kB]
Get:5 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main libibverbs1 amd64 1.1.5-1ubuntu1 [27.3 kB]
Get:6 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/universe libopenmpi1.3 amd64 1.4.3-2.1ubuntu3 [1,350 kB]
Get:7 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/universe openmpi-common all 1.4.3-2.1ubuntu3 [84.4 kB]
Get:8 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/universe openmpi-bin amd64 1.4.3-2.1ubuntu3 [156 kB]
Get:9 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/universe openmpi-checkpoint amd64 1.4.3-2.1ubuntu3 [39.9 kB]
Fetched 1,823 kB in 0s (4,288 kB/s)      
Selecting previously unselected package libcr0.
(Reading database ... 50875 files and directories currently installed.)
Unpacking libcr0 (from .../libcr0_0.8.2-15ubuntu2.1_amd64.deb) ...
Selecting previously unselected package blcr-util.
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Selecting previously unselected package libtorque2.
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Selecting previously unselected package libibverbs1.
Unpacking libibverbs1 (from .../libibverbs1_1.1.5-1ubuntu1_amd64.deb) ...
Selecting previously unselected package libopenmpi1.3.
Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.3-2.1ubuntu3_amd64.deb) ...
Selecting previously unselected package openmpi-common.
Unpacking openmpi-common (from .../openmpi-common_1.4.3-2.1ubuntu3_all.deb) ...
Selecting previously unselected package openmpi-bin.
Unpacking openmpi-bin (from .../openmpi-bin_1.4.3-2.1ubuntu3_amd64.deb) ...
Selecting previously unselected package openmpi-checkpoint.
Unpacking openmpi-checkpoint (from .../openmpi-checkpoint_1.4.3-2.1ubuntu3_amd64.deb) ...
Processing triggers for man-db ...
Setting up libcr0 (0.8.2-15ubuntu2.1) ...
Setting up blcr-util (0.8.2-15ubuntu2.1) ...
Setting up libnuma1 (2.0.8~rc3-1) ...
Setting up libtorque2 (2.4.16+dfsg-1build1) ...
Setting up libibverbs1 (1.1.5-1ubuntu1) ...
Setting up libopenmpi1.3 (1.4.3-2.1ubuntu3) ...
Setting up openmpi-common (1.4.3-2.1ubuntu3) ...
Setting up openmpi-bin (1.4.3-2.1ubuntu3) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode.
Setting up openmpi-checkpoint (1.4.3-2.1ubuntu3) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place

ubuntu@ip-172-31-40-91:~$ sudo apt-get install libblacs-mpi1
Reading package lists... Done
Building dependency tree       
Reading state information... Done
The following extra packages will be installed:
  mpi-default-bin
The following NEW packages will be installed:
  libblacs-mpi1 mpi-default-bin
0 upgraded, 2 newly installed, 0 to remove and 61 not upgraded.
Need to get 68.0 kB of archives.
After this operation, 262 kB of additional disk space will be used.
Do you want to continue [Y/n]? y
Get:1 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/universe mpi-default-bin amd64 1.0.1 [3,042 B]
Get:2 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/universe libblacs-mpi1 amd64 1.1-31ubuntu1 [64.9 kB]
Fetched 68.0 kB in 0s (633 kB/s)   
Selecting previously unselected package mpi-default-bin.
(Reading database ... 51162 files and directories currently installed.)
Unpacking mpi-default-bin (from .../mpi-default-bin_1.0.1_amd64.deb) ...
Selecting previously unselected package libblacs-mpi1.
Unpacking libblacs-mpi1 (from .../libblacs-mpi1_1.1-31ubuntu1_amd64.deb) ...
Setting up mpi-default-bin (1.0.1) ...
Setting up libblacs-mpi1 (1.1-31ubuntu1) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place

ubuntu@ip-172-31-40-91:~$ sudo apt-get install libblacs-mpi1-dev
Reading package lists... Done
Building dependency tree       
Reading state information... Done
E: Unable to locate package libblacs-mpi1-dev

ubuntu@ip-172-31-40-91:~$ sudo apt-get install libblacs-mpi-dev
Reading package lists... Done
Building dependency tree       
Reading state information... Done
The following extra packages will be installed:
  libibverbs-dev libopenmpi-dev mpi-default-dev
The following NEW packages will be installed:
  libblacs-mpi-dev libibverbs-dev libopenmpi-dev mpi-default-dev
0 upgraded, 4 newly installed, 0 to remove and 61 not upgraded.
Need to get 2,871 kB of archives.
After this operation, 14.7 MB of additional disk space will be used.
Do you want to continue [Y/n]? y
Get:1 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main libibverbs-dev amd64 1.1.5-1ubuntu1 [76.1 kB]
Get:2 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/universe libopenmpi-dev amd64 1.4.3-2.1ubuntu3 [2,718 kB]
Get:3 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/universe mpi-default-dev amd64 1.0.1 [3,648 B]
Get:4 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/universe libblacs-mpi-dev amd64 1.1-31ubuntu1 [72.7 kB]
Fetched 2,871 kB in 0s (5,560 kB/s)    
Selecting previously unselected package libibverbs-dev.
(Reading database ... 51175 files and directories currently installed.)
Unpacking libibverbs-dev (from .../libibverbs-dev_1.1.5-1ubuntu1_amd64.deb) ...
Selecting previously unselected package libopenmpi-dev.
Unpacking libopenmpi-dev (from .../libopenmpi-dev_1.4.3-2.1ubuntu3_amd64.deb) ...
Selecting previously unselected package mpi-default-dev.
Unpacking mpi-default-dev (from .../mpi-default-dev_1.0.1_amd64.deb) ...
Selecting previously unselected package libblacs-mpi-dev.
Unpacking libblacs-mpi-dev (from .../libblacs-mpi-dev_1.1-31ubuntu1_amd64.deb) ...
Processing triggers for man-db ...
Setting up libibverbs-dev (1.1.5-1ubuntu1) ...
Setting up libopenmpi-dev (1.4.3-2.1ubuntu3) ...
update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode.
Setting up mpi-default-dev (1.0.1) ...
Setting up libblacs-mpi-dev (1.1-31ubuntu1) ...

ubuntu@ip-172-31-40-91:~$ sudo apt-cache search openblas
libopenblas-base - Optimized BLAS (linear algebra) library based on GotoBLAS2
libopenblas-dev - Optimized BLAS (linear algebra) library based on GotoBLAS2

ubuntu@ip-172-31-40-91:~$ sudo apt-get install libopenblas-base
Reading package lists... Done
Building dependency tree       
Reading state information... Done
Suggested packages:
  liblapack3gf
The following NEW packages will be installed:
  libopenblas-base
0 upgraded, 1 newly installed, 0 to remove and 61 not upgraded.
Need to get 3,625 kB of archives.
After this operation, 19.6 MB of additional disk space will be used.
Get:1 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/universe libopenblas-base amd64 0.1alpha2.2-3 [3,625 kB]
Fetched 3,625 kB in 0s (11.8 MB/s)     
Selecting previously unselected package libopenblas-base.
(Reading database ... 51804 files and directories currently installed.)
Unpacking libopenblas-base (from .../libopenblas-base_0.1alpha2.2-3_amd64.deb) ...
Setting up libopenblas-base (0.1alpha2.2-3) ...
update-alternatives: using /usr/lib/openblas-base/libopenblas.so.0 to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.

ubuntu@ip-172-31-40-91:~$ sudo apt-get install libopenblas-dev
Reading package lists... Done
Building dependency tree       
Reading state information... Done
Suggested packages:
  liblapack-dev
The following NEW packages will be installed:
  libopenblas-dev
0 upgraded, 1 newly installed, 0 to remove and 61 not upgraded.
Need to get 4,188 kB of archives.
After this operation, 31.1 MB of additional disk space will be used.
Get:1 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/universe libopenblas-dev amd64 0.1alpha2.2-3 [4,188 kB]
Fetched 4,188 kB in 0s (10.1 MB/s)    
Selecting previously unselected package libopenblas-dev.
(Reading database ... 51812 files and directories currently installed.)
Unpacking libopenblas-dev (from .../libopenblas-dev_0.1alpha2.2-3_amd64.deb) ...
Setting up libopenblas-dev (0.1alpha2.2-3) ...
update-alternatives: using /usr/lib/openblas-base/libopenblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.

ubuntu@ip-172-31-40-91:~$ sudo apt-get install libscalapack-mpi1
Reading package lists... Done
Building dependency tree       
Reading state information... Done
The following extra packages will be installed:
  liblapack3gf
Suggested packages:
  scalapack-doc
The following NEW packages will be installed:
  liblapack3gf libscalapack-mpi1
0 upgraded, 2 newly installed, 0 to remove and 61 not upgraded.
Need to get 7,621 kB of archives.
After this operation, 16.6 MB of additional disk space will be used.
Do you want to continue [Y/n]? y
Get:1 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main liblapack3gf amd64 3.3.1-1 [4,424 kB]
Get:2 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/universe libscalapack-mpi1 amd64 1.8.0-7build1 [3,197 kB]
Fetched 7,621 kB in 0s (16.0 MB/s)       
Preconfiguring packages ...
Selecting previously unselected package liblapack3gf.
(Reading database ... 51818 files and directories currently installed.)
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_amd64.deb) ...
Selecting previously unselected package libscalapack-mpi1.
Unpacking libscalapack-mpi1 (from .../libscalapack-mpi1_1.8.0-7build1_amd64.deb) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up libscalapack-mpi1 (1.8.0-7build1) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place

ubuntu@ip-172-31-40-91:~$ sudo apt-get install libscalapack-mpi-dev
Reading package lists... Done
Building dependency tree       
Reading state information... Done
Suggested packages:
  scalapack-doc
The following NEW packages will be installed:
  libscalapack-mpi-dev
0 upgraded, 1 newly installed, 0 to remove and 61 not upgraded.
Need to get 3,546 kB of archives.
After this operation, 10.8 MB of additional disk space will be used.
Get:1 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/universe libscalapack-mpi-dev amd64 1.8.0-7build1 [3,546 kB]
Fetched 3,546 kB in 0s (16.2 MB/s)         
Selecting previously unselected package libscalapack-mpi-dev.
(Reading database ... 51833 files and directories currently installed.)
Unpacking libscalapack-mpi-dev (from .../libscalapack-mpi-dev_1.8.0-7build1_amd64.deb) ...
Setting up libscalapack-mpi-dev (1.8.0-7build1) ...

ubuntu@ip-172-31-40-91:~$ cd /
ubuntu@ip-172-31-40-91:/$ sudo mkdir aclib
ubuntu@ip-172-31-40-91:/$ cd aclib

ubuntu@ip-172-31-40-91:/aclib$ sudo find / -iname "gfortran*"
/usr/bin/gfortran
/usr/bin/gfortran-4.6
/usr/share/vim/vim73/compiler/gfortran.vim
/usr/share/man/man1/gfortran-4.6.1.gz
/usr/share/man/man1/gfortran.1.gz
/usr/share/doc/gfortran
/usr/share/doc/gfortran-4.6
/var/lib/dpkg/info/gfortran.list
/var/lib/dpkg/info/gfortran.postinst
/var/lib/dpkg/info/gfortran.prerm
/var/lib/dpkg/info/gfortran-4.6.list
/var/lib/dpkg/info/gfortran-4.6.md5sums
/var/cache/apt/archives/gfortran_4%3a4.6.3-1ubuntu5_amd64.deb
/var/cache/apt/archives/gfortran-4.6_4.6.3-1ubuntu5_amd64.deb
ubuntu@ip-172-31-40-91:/aclib$ sudo find / -iname "libgfortran*"
/usr/share/doc/libgfortran3
/usr/lib/x86_64-linux-gnu/libgfortran.so.3
/usr/lib/x86_64-linux-gnu/libgfortran.so.3.0.0
/usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.so
/usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.a
/usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.spec
/usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortranbegin.a
/var/lib/dpkg/info/libgfortran3:amd64.postrm
/var/lib/dpkg/info/libgfortran3:amd64.shlibs
/var/lib/dpkg/info/libgfortran3:amd64.symbols
/var/lib/dpkg/info/libgfortran3:amd64.md5sums
/var/lib/dpkg/info/libgfortran3:amd64.list
/var/lib/dpkg/info/libgfortran3:amd64.postinst
/var/cache/apt/archives/libgfortran3_4.6.3-1ubuntu5_amd64.deb
ubuntu@ip-172-31-40-91:/aclib$ 
ubuntu@ip-172-31-40-91:/aclib$ 
ubuntu@ip-172-31-40-91:/aclib$ 
ubuntu@ip-172-31-40-91:/aclib$ ls -la
total 8
drwxr-xr-x  2 root root 4096 Jan 23 22:54 .
drwxr-xr-x 24 root root 4096 Jan 23 22:54 ..
ubuntu@ip-172-31-40-91:/aclib$ sudo ln -s /usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.so
ubuntu@ip-172-31-40-91:/aclib$ ls -la
total 8
drwxr-xr-x  2 root root 4096 Jan 23 23:07 .
drwxr-xr-x 24 root root 4096 Jan 23 22:54 ..
lrwxrwxrwx  1 root root   48 Jan 23 23:07 libgfortran.so -> /usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.so

ubuntu@ip-172-31-40-91:/aclib$ sudo find / -iname "libblas*"
/usr/lib/libblas.so
/usr/lib/libblas.so.3gf
/usr/lib/libblas.a
/etc/alternatives/libblas.so
/etc/alternatives/libblas.so.3gf
/etc/alternatives/libblas.a
/var/lib/dpkg/alternatives/libblas.so
/var/lib/dpkg/alternatives/libblas.so.3gf

ubuntu@ip-172-31-40-91:/aclib$ sudo ln -s /usr/lib/libblas.so
ubuntu@ip-172-31-40-91:/aclib$ sudo find / -iname "liblapack*"
/usr/share/doc/liblapack3gf
/usr/lib/lapack/liblapack.so.3gf
/usr/lib/lapack/liblapack.so.3gf.0
/usr/lib/liblapack.so.3gf
/etc/alternatives/liblapack.so.3gf
/var/lib/dpkg/alternatives/liblapack.so.3gf
/var/lib/dpkg/info/liblapack3gf.list
/var/lib/dpkg/info/liblapack3gf.prerm
/var/lib/dpkg/info/liblapack3gf.shlibs
/var/lib/dpkg/info/liblapack3gf.postrm
/var/lib/dpkg/info/liblapack3gf.templates
/var/lib/dpkg/info/liblapack3gf.postinst
/var/lib/dpkg/info/liblapack3gf.md5sums
/var/lib/dpkg/info/liblapack3gf.config
/var/cache/apt/archives/liblapack3gf_3.3.1-1_amd64.deb
ubuntu@ip-172-31-40-91:/aclib$ ls -la /usr/lib/liblapack.so.3gf
lrwxrwxrwx 1 root root 34 Jan 23 22:53 /usr/lib/liblapack.so.3gf -> /etc/alternatives/liblapack.so.3gf
ubuntu@ip-172-31-40-91:/aclib$ ls -la /usr/lib/lapack/liblapack.so.3gf
lrwxrwxrwx 1 root root 18 Sep 10  2011 /usr/lib/lapack/liblapack.so.3gf -> liblapack.so.3gf.0
ubuntu@ip-172-31-40-91:/aclib$ ls -la /usr/lib/lapack/liblapack.so.3gf.0
-rw-r--r-- 1 root root 9342808 Sep 10  2011 /usr/lib/lapack/liblapack.so.3gf.0
ubuntu@ip-172-31-40-91:/aclib$ ln -s /usr/lib/lapack/liblapack.so.3gf.0
ln: failed to create symbolic link `./liblapack.so.3gf.0': Permission denied

ubuntu@ip-172-31-40-91:/aclib$ sudo ln -s /usr/lib/lapack/liblapack.so.3gf.0

ubuntu@ip-172-31-40-91:/aclib$ sudo find / -iname "*libscalapack*"
/usr/share/doc/libscalapack-mpi-dev
/usr/share/doc/libscalapack-mpi1
/usr/lib/libscalapack-openmpi.a
/usr/lib/libscalapack-openmpi.so.1.8.0
/usr/lib/libscalapack-openmpi.so.1
/usr/lib/libscalapack-openmpi.so
/var/lib/dpkg/info/libscalapack-mpi1.postinst
/var/lib/dpkg/info/libscalapack-mpi1.shlibs
/var/lib/dpkg/info/libscalapack-mpi1.list
/var/lib/dpkg/info/libscalapack-mpi-dev.md5sums
/var/lib/dpkg/info/libscalapack-mpi1.postrm
/var/lib/dpkg/info/libscalapack-mpi-dev.list
/var/lib/dpkg/info/libscalapack-mpi1.md5sums
/var/cache/apt/archives/libscalapack-mpi-dev_1.8.0-7build1_amd64.deb
/var/cache/apt/archives/libscalapack-mpi1_1.8.0-7build1_amd64.deb
ubuntu@ip-172-31-40-91:/aclib$ ls -la /usr/lib/libscalapack-openmpi.so
lrwxrwxrwx 1 root root 25 Jan  2  2012 /usr/lib/libscalapack-openmpi.so -> libscalapack-openmpi.so.1

ubuntu@ip-172-31-40-91:/aclib$ sudo ln -s libscalapack-openmpi.so.1

ubuntu@ip-172-31-40-91:/aclib$ sudo find / -iname "*openblas*"
/usr/share/doc/libopenblas-base
/usr/share/doc/libopenblas-dev
/usr/lib/openblas-base
/usr/lib/openblas-base/libopenblas.so.0
/usr/lib/openblas-base/libopenblas.a
/usr/lib/openblas-base/libopenblas.so
/var/lib/dpkg/info/libopenblas-dev.prerm
/var/lib/dpkg/info/libopenblas-dev.postinst
/var/lib/dpkg/info/libopenblas-base.prerm
/var/lib/dpkg/info/libopenblas-base.list
/var/lib/dpkg/info/libopenblas-base.postinst
/var/lib/dpkg/info/libopenblas-dev.list
/var/lib/dpkg/info/libopenblas-base.md5sums
/var/lib/dpkg/info/libopenblas-dev.md5sums
/var/cache/apt/archives/libopenblas-base_0.1alpha2.2-3_amd64.deb
/var/cache/apt/archives/libopenblas-dev_0.1alpha2.2-3_amd64.deb

ubuntu@ip-172-31-40-91:/aclib$ ls -la /usr/lib/openblas-base/
total 49312
drwxr-xr-x  2 root root     4096 Jan 23 22:52 .
drwxr-xr-x 56 root root    12288 Jan 23 22:53 ..
-rw-r--r--  1 root root 30981552 Jul 28  2011 libopenblas.a
lrwxrwxrwx  1 root root       16 Jul 28  2011 libopenblas.so -> libopenblas.so.0
-rw-r--r--  1 root root 19493200 Jul 28  2011 libopenblas.so.0
ubuntu@ip-172-31-40-91:/aclib$ sudo ln -s /usr/lib/openblas-base/libopenblas.so.0
ubuntu@ip-172-31-40-91:/aclib$ 
ubuntu@ip-172-31-40-91:/aclib$ sudo find / -iname "*mpi*"
/usr/bin/mpirun.openmpi
/usr/bin/ompi-ps
/usr/bin/mpiCC.openmpi
/usr/bin/mpic++
/usr/bin/pycompile
/usr/bin/ompi-restart
/usr/bin/mpicxx.openmpi
/usr/bin/mpiexec
/usr/bin/mpirun
/usr/bin/mpif90
/usr/bin/ompi-server
/usr/bin/mpiCC
/usr/bin/ompi-checkpoint
/usr/bin/mpicxx
/usr/bin/ompi_info
/usr/bin/mpif90.openmpi
/usr/bin/mpicc.openmpi
/usr/bin/cheetah-compile
/usr/bin/ompi-clean
/usr/bin/mpicc
/usr/bin/mpif77.openmpi
/usr/bin/mpic++.openmpi
/usr/bin/mpif77
/usr/bin/ompi-iof
/usr/bin/mpiexec.openmpi
/usr/share/vim/vim73/compiler
/usr/share/openmpi
/usr/share/openmpi/mpicc-vt-wrapper-data.txt
/usr/share/openmpi/help-ompi-crcp-base.txt
/usr/share/openmpi/mpif77.openmpi-wrapper-data.txt
/usr/share/openmpi/help-mpi-btl-tcp.txt
/usr/share/openmpi/help-ompi-crcp-bkmrk.txt
/usr/share/openmpi/help-ompi_info.txt
/usr/share/openmpi/mpif90-vt-wrapper-data.txt
/usr/share/openmpi/mpif90-wrapper-data.txt
/usr/share/openmpi/mpicxx-wrapper-data.txt
/usr/share/openmpi/help-ompi-dpm-orte.txt
/usr/share/openmpi/mpiCC-vt-wrapper-data.txt
/usr/share/openmpi/mpif77-vt-wrapper-data.txt
/usr/share/openmpi/help-mpi-btl-openib.txt
/usr/share/openmpi/mpic++.openmpi-wrapper-data.txt
/usr/share/openmpi/help-mpi-api.txt
/usr/share/openmpi/help-mpi-common-sm.txt
/usr/share/openmpi/help-mpi-runtime.txt
/usr/share/openmpi/mpif77-wrapper-data.txt
/usr/share/openmpi/help-mpi-btl-base.txt
/usr/share/openmpi/help-mpi-errors.txt
/usr/share/openmpi/openmpi-valgrind.supp
/usr/share/openmpi/mpic++-vt-wrapper-data.txt
/usr/share/openmpi/mpicxx.openmpi-wrapper-data.txt
/usr/share/openmpi/mpicc.openmpi-wrapper-data.txt
/usr/share/openmpi/mpiCC-wrapper-data.txt
/usr/share/openmpi/help-ompi-server.txt
/usr/share/openmpi/mpic++-wrapper-data.txt
/usr/share/openmpi/mpicxx-vt-wrapper-data.txt
/usr/share/openmpi/mpicc-wrapper-data.txt
/usr/share/openmpi/help-ompi-pubsub-orte.txt
/usr/share/openmpi/mpiCC.openmpi-wrapper-data.txt
/usr/share/openmpi/help-ompi-dpm-base.txt
/usr/share/openmpi/mpif90.openmpi-wrapper-data.txt
/usr/share/openmpi/help-mpi-btl-openib-cpc-base.txt
/usr/share/man/man1/ompi-clean.1.gz
/usr/share/man/man1/mpif77.1.gz
/usr/share/man/man1/mpicc.openmpi.1.gz
/usr/share/man/man1/ompi_info.1.gz
/usr/share/man/man1/ompi-iof.1.gz
/usr/share/man/man1/mpiexec.1.gz
/usr/share/man/man1/ompi-checkpoint.1.gz
/usr/share/man/man1/mpif90.1.gz
/usr/share/man/man1/mpic++.openmpi.1.gz
/usr/share/man/man1/mpiCC.openmpi.1.gz
/usr/share/man/man1/mpicc.1.gz
/usr/share/man/man1/mpic++.1.gz
/usr/share/man/man1/ompi-restart.1.gz
/usr/share/man/man1/mpicxx.1.gz
/usr/share/man/man1/mpif90.openmpi.1.gz
/usr/share/man/man1/mpirun.openmpi.1.gz
/usr/share/man/man1/ompi-ps.1.gz
/usr/share/man/man1/mpif77.openmpi.1.gz
/usr/share/man/man1/pycompile.1.gz
/usr/share/man/man1/mpiexec.openmpi.1.gz
/usr/share/man/man1/ompi-server.1.gz
/usr/share/man/man1/cheetah-compile.1.gz
/usr/share/man/man1/mpicxx.openmpi.1.gz
/usr/share/man/man1/mpiCC.1.gz
/usr/share/man/man1/mpirun.1.gz
/usr/share/man/man7/ompi_crcp.7.gz
/usr/share/debhelper/autoscripts/postinst-pycompile
/usr/share/pyshared/Cheetah/Compiler.py
/usr/share/mpi-default-dev
/usr/share/doc/libscalapack-mpi-dev
/usr/share/doc/libopenmpi1.3
/usr/share/doc/libscalapack-mpi1
/usr/share/doc/openmpi-checkpoint
/usr/share/doc/mpi-default-bin
/usr/share/doc/libblacs-mpi-dev
/usr/share/doc/mpi-default-dev
/usr/share/doc/libopenmpi-dev
/usr/share/doc/openmpi-bin
/usr/share/doc/libblacs-mpi1
/usr/share/doc/openmpi-common
/usr/lib/libopenmpi_malloc.so.0.0.0
/usr/lib/libmpif90.so
/usr/lib/libmpi_f90.so.0.0.1
/usr/lib/libmpi.so.0
/usr/lib/libblacs-openmpi.so.1.1
/usr/lib/libblacs-openmpi.a
/usr/lib/x86_64-linux-gnu/glib-2.0/glib-compile-resources
/usr/lib/x86_64-linux-gnu/glib-2.0/glib-compile-schemas
/usr/lib/libscalapack-openmpi.a
/usr/lib/libblacsF77init-openmpi.so.1.1
/usr/lib/libscalapack-openmpi.so.1.8.0
/usr/lib/libblacsF77init-openmpi.a
/usr/lib/libmpi_f77.so
/usr/lib/openmpi
/usr/lib/openmpi/lib/mpi.mod
/usr/lib/openmpi/lib/libopenmpi_malloc.so.0.0.0
/usr/lib/openmpi/lib/libvt.fmpi.a
/usr/lib/openmpi/lib/libmpi_f90.so.0.0.1
/usr/lib/openmpi/lib/libopenmpi_malloc.la
/usr/lib/openmpi/lib/libmpi_f77.so
/usr/lib/openmpi/lib/openmpi
/usr/lib/openmpi/lib/openmpi/libompi_dbg_msgq.a
/usr/lib/openmpi/lib/openmpi/libompi_dbg_msgq.so
/usr/lib/openmpi/lib/openmpi/libompi_dbg_msgq.la
/usr/lib/openmpi/lib/libmpi_f90.so
/usr/lib/openmpi/lib/libmpi_f90.la
/usr/lib/openmpi/lib/libmpi.a
/usr/lib/openmpi/lib/libmpi_cxx.a
/usr/lib/openmpi/lib/libmpi_cxx.so
/usr/lib/openmpi/lib/libmpi_f77.a
/usr/lib/openmpi/lib/libmpi.so.0.0.2
/usr/lib/openmpi/lib/libmpi_cxx.la
/usr/lib/openmpi/lib/libmpi_f90.a
/usr/lib/openmpi/lib/libmpi_f77.la
/usr/lib/openmpi/lib/libmpi_cxx.so.0.0.1
/usr/lib/openmpi/lib/libvt.ompi.a
/usr/lib/openmpi/lib/libmpi.la
/usr/lib/openmpi/lib/libvt.mpi.a
/usr/lib/openmpi/lib/libopenmpi_malloc.a
/usr/lib/openmpi/lib/libmpi_f77.so.0.0.1
/usr/lib/openmpi/lib/libopenmpi_malloc.so
/usr/lib/openmpi/lib/libmpi.so
/usr/lib/openmpi/include/mpif-config.h
/usr/lib/openmpi/include/openmpi
/usr/lib/openmpi/include/openmpi/ompi
/usr/lib/openmpi/include/openmpi/ompi/mpi
/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h
/usr/lib/openmpi/include/openmpi/ompi/mpi/f77/prototypes_mpi.h
/usr/lib/openmpi/include/openmpi/ompi/class/ompi_rb_tree.h
/usr/lib/openmpi/include/openmpi/ompi/class/ompi_free_list.h
/usr/lib/openmpi/include/openmpi/ompi/class/ompi_bitmap.h
/usr/lib/openmpi/include/openmpi/ompi/class/ompi_seq_tracker.h
/usr/lib/openmpi/include/openmpi/ompi/debuggers/ompi_common_dll_defs.h
/usr/lib/openmpi/include/openmpi/ompi/debuggers/ompi_msgq_dll_defs.h
/usr/lib/openmpi/include/openmpi/ompi/runtime/ompi_cr.h
/usr/lib/openmpi/include/openmpi/ompi/runtime/mpiruntime.h
/usr/lib/openmpi/include/openmpi/ompi/runtime/ompi_module_exchange.h
/usr/lib/openmpi/include/openmpi/ompi_config.h
/usr/lib/openmpi/include/mpif.h
/usr/lib/openmpi/include/mpif-common.h
/usr/lib/openmpi/include/mpif-mpi-io.h
/usr/lib/openmpi/include/vampirtrace
/usr/lib/openmpi/include/mpi.h
/usr/lib/libmpi_f90.so
/usr/lib/libblacsF77init-openmpi.so.1
/usr/lib/libmpi_cxx.so
/usr/lib/libopenmpi_malloc.so.0
/usr/lib/libblacsCinit-openmpi.so.1.1
/usr/lib/libmpi.so.0.0.2
/usr/lib/libblacsCinit-openmpi.so
/usr/lib/libmpi++.so
/usr/lib/python2.7/compileall.py
/usr/lib/python2.7/dist-packages/Cheetah/Compiler.pyc
/usr/lib/python2.7/dist-packages/Cheetah/Compiler.py
/usr/lib/python2.7/sre_compile.py
/usr/lib/python2.7/py_compile.py
/usr/lib/python2.7/compiler
/usr/lib/python2.7/compileall.pyc
/usr/lib/python2.7/sre_compile.pyc
/usr/lib/python2.7/py_compile.pyc
/usr/lib/python2.7/distutils/msvc9compiler.py
/usr/lib/python2.7/distutils/bcppcompiler.pyc
/usr/lib/python2.7/distutils/ccompiler.pyc
/usr/lib/python2.7/distutils/cygwinccompiler.py
/usr/lib/python2.7/distutils/unixccompiler.py
/usr/lib/python2.7/distutils/msvc9compiler.pyc
/usr/lib/python2.7/distutils/ccompiler.py
/usr/lib/python2.7/distutils/msvccompiler.py
/usr/lib/python2.7/distutils/emxccompiler.pyc
/usr/lib/python2.7/distutils/bcppcompiler.py
/usr/lib/python2.7/distutils/emxccompiler.py
/usr/lib/python2.7/distutils/unixccompiler.pyc
/usr/lib/python2.7/distutils/cygwinccompiler.pyc
/usr/lib/python2.7/distutils/msvccompiler.pyc
/usr/lib/libblacsCinit-openmpi.so.1
/usr/lib/libblacs-openmpi.so
/usr/lib/libblacsCinit-openmpi.a
/usr/lib/libscalapack-openmpi.so.1
/usr/lib/libmpi_f77.so.0
/usr/lib/libscalapack-openmpi.so
/usr/lib/libmpi_cxx.so.0.0.1
/usr/lib/libmpi_f90.so.0
/usr/lib/libblacsF77init-openmpi.so
/usr/lib/libmpi_cxx.so.0
/usr/lib/libmpif77.so
/usr/lib/libblacs-openmpi.so.1
/usr/lib/libmpi_f77.so.0.0.1
/usr/lib/libmpi.so
/usr/include/mpi
/usr/include/openmpi
/usr/src/linux-headers-3.2.0-54-virtual/scripts/mkcompile_h
/usr/src/linux-headers-3.2.0-54-virtual/include/linux/compiler-gcc4.h
/usr/src/linux-headers-3.2.0-54-virtual/include/linux/compiler-gcc3.h
/usr/src/linux-headers-3.2.0-54-virtual/include/linux/compiler.h
/usr/src/linux-headers-3.2.0-54-virtual/include/linux/compiler-intel.h
/usr/src/linux-headers-3.2.0-54-virtual/include/linux/compiler-gcc.h
/usr/src/linux-headers-3.2.0-54-virtual/include/config/pata/mpiix.h
/usr/src/linux-headers-3.2.0-54-virtual/include/config/cross/compile.h
/usr/src/linux-headers-3.2.0-54-virtual/include/config/usb/serial/siemens/mpi.h
/usr/src/linux-headers-3.2.0-54-virtual/include/generated/compile.h
/usr/src/linux-headers-3.2.0-54/scripts/mkcompile_h
/usr/src/linux-headers-3.2.0-54/include/linux/compiler-gcc4.h
/usr/src/linux-headers-3.2.0-54/include/linux/compiler-gcc3.h
/usr/src/linux-headers-3.2.0-54/include/linux/compiler.h
/usr/src/linux-headers-3.2.0-54/include/linux/compiler-intel.h
/usr/src/linux-headers-3.2.0-54/include/linux/compiler-gcc.h
/usr/src/linux-headers-3.2.0-54/arch/powerpc/include/asm/mpic.h
/usr/src/linux-headers-3.2.0-54/arch/alpha/include/asm/compiler.h
/usr/src/linux-headers-3.2.0-54/arch/mips/include/asm/compiler.h
/usr/src/linux-headers-3.2.0-54/Documentation/networking/timestamping
/etc/openmpi
/etc/openmpi/openmpi-mca-params.conf
/etc/openmpi/openmpi-totalview.tcl
/etc/openmpi/openmpi-default-hostfile
/etc/alternatives/libmpif90.so
/etc/alternatives/mpic++
/etc/alternatives/mpif77.1.gz
/etc/alternatives/mpi
/etc/alternatives/mpiexec.1.gz
/etc/alternatives/mpiexec
/etc/alternatives/mpif90.1.gz
/etc/alternatives/mpirun
/etc/alternatives/mpif90
/etc/alternatives/mpiCC
/etc/alternatives/libmpi++.so
/etc/alternatives/mpicc.1.gz
/etc/alternatives/mpic++.1.gz
/etc/alternatives/mpicxx
/etc/alternatives/mpicxx.1.gz
/etc/alternatives/mpicc
/etc/alternatives/libmpif77.so
/etc/alternatives/mpif77
/etc/alternatives/mpiCC.1.gz
/etc/alternatives/mpirun.1.gz
/etc/alternatives/libmpi.so
/var/lib/dpkg/alternatives/mpi
/var/lib/dpkg/alternatives/mpirun
/var/lib/dpkg/info/libopenmpi-dev.preinst
/var/lib/dpkg/info/mpi-default-dev.md5sums
/var/lib/dpkg/info/libblacs-mpi1.postinst
/var/lib/dpkg/info/openmpi-bin.conffiles
/var/lib/dpkg/info/libopenmpi-dev.list
/var/lib/dpkg/info/libscalapack-mpi1.postinst
/var/lib/dpkg/info/libblacs-mpi1.shlibs
/var/lib/dpkg/info/openmpi-bin.postinst
/var/lib/dpkg/info/openmpi-bin.md5sums
/var/lib/dpkg/info/libopenmpi-dev.prerm
/var/lib/dpkg/info/libscalapack-mpi1.shlibs
/var/lib/dpkg/info/mpi-default-bin.md5sums
/var/lib/dpkg/info/libblacs-mpi1.postrm
/var/lib/dpkg/info/openmpi-checkpoint.md5sums
/var/lib/dpkg/info/libscalapack-mpi1.list
/var/lib/dpkg/info/mpi-default-bin.list
/var/lib/dpkg/info/libscalapack-mpi-dev.md5sums
/var/lib/dpkg/info/libscalapack-mpi1.postrm
/var/lib/dpkg/info/libopenmpi1.3.shlibs
/var/lib/dpkg/info/libopenmpi-dev.md5sums
/var/lib/dpkg/info/libopenmpi1.3.list
/var/lib/dpkg/info/libopenmpi1.3.postinst
/var/lib/dpkg/info/openmpi-bin.list
/var/lib/dpkg/info/libopenmpi1.3.md5sums
/var/lib/dpkg/info/libblacs-mpi-dev.md5sums
/var/lib/dpkg/info/libscalapack-mpi-dev.list
/var/lib/dpkg/info/openmpi-common.md5sums
/var/lib/dpkg/info/libblacs-mpi1.md5sums
/var/lib/dpkg/info/libblacs-mpi-dev.list
/var/lib/dpkg/info/libblacs-mpi1.list
/var/lib/dpkg/info/openmpi-bin.prerm
/var/lib/dpkg/info/libopenmpi1.3.postrm
/var/lib/dpkg/info/openmpi-common.list
/var/lib/dpkg/info/libscalapack-mpi1.md5sums
/var/lib/dpkg/info/mpi-default-dev.list
/var/lib/dpkg/info/libopenmpi-dev.postinst
/var/lib/dpkg/info/openmpi-checkpoint.list
/var/cache/apt/archives/mpi-default-bin_1.0.1_amd64.deb
/var/cache/apt/archives/mpi-default-dev_1.0.1_amd64.deb
/var/cache/apt/archives/openmpi-bin_1.4.3-2.1ubuntu3_amd64.deb
/var/cache/apt/archives/libopenmpi1.3_1.4.3-2.1ubuntu3_amd64.deb
/var/cache/apt/archives/libblacs-mpi1_1.1-31ubuntu1_amd64.deb
/var/cache/apt/archives/openmpi-common_1.4.3-2.1ubuntu3_all.deb
/var/cache/apt/archives/libscalapack-mpi-dev_1.8.0-7build1_amd64.deb
/var/cache/apt/archives/libscalapack-mpi1_1.8.0-7build1_amd64.deb
/var/cache/apt/archives/openmpi-checkpoint_1.4.3-2.1ubuntu3_amd64.deb
/var/cache/apt/archives/libblacs-mpi-dev_1.1-31ubuntu1_amd64.deb
/var/cache/apt/archives/libopenmpi-dev_1.4.3-2.1ubuntu3_amd64.deb
/sys/hypervisor/compilation
/sys/hypervisor/compilation/compiler
/sys/hypervisor/compilation/compiled_by
/sys/hypervisor/compilation/compile_date
/aclib/libscalapack-openmpi.so.1

ubuntu@ip-172-31-40-91:/aclib$ sudo find / -iname "*mpifh"

ubuntu@ip-172-31-40-91:/aclib$ sudo find / -iname "*mpifh*"

ubuntu@ip-172-31-40-91:/aclib$ openmpi
openmpi: command not found

ubuntu@ip-172-31-40-91:/aclib$ open-mpi
open-mpi: command not found

ubuntu@ip-172-31-40-91:/aclib$ ompi_info
                 Package: Open MPI buildd@yellow Distribution
                Open MPI: 1.4.3
   Open MPI SVN revision: r23834
   Open MPI release date: Oct 05, 2010
                Open RTE: 1.4.3
   Open RTE SVN revision: r23834
   Open RTE release date: Oct 05, 2010
                    OPAL: 1.4.3
       OPAL SVN revision: r23834
       OPAL release date: Oct 05, 2010
            Ident string: 1.4.3
                  Prefix: /usr
 Configured architecture: x86_64-pc-linux-gnu
          Configure host: yellow
           Configured by: buildd
           Configured on: Thu Mar 29 08:40:17 UTC 2012
          Configure host: yellow
                Built by: buildd
                Built on: Thu Mar 29 08:52:45 UTC 2012
              Built host: yellow
              C bindings: yes
            C++ bindings: yes
      Fortran77 bindings: yes (all)
      Fortran90 bindings: yes
 Fortran90 bindings size: small
              C compiler: gcc
     C compiler absolute: /usr/bin/gcc
            C++ compiler: g++
   C++ compiler absolute: /usr/bin/g++
      Fortran77 compiler: gfortran
  Fortran77 compiler abs: /usr/bin/gfortran
      Fortran90 compiler: gfortran
  Fortran90 compiler abs: /usr/bin/gfortran
             C profiling: yes
           C++ profiling: yes
     Fortran77 profiling: yes
     Fortran90 profiling: yes
          C++ exceptions: no
          Thread support: posix (mpi: no, progress: no)
           Sparse Groups: no
  Internal debug support: no
     MPI parameter check: runtime
Memory profiling support: no
Memory debugging support: no
         libltdl support: yes
   Heterogeneous support: yes
 mpirun default --prefix: no
         MPI I/O support: yes
       MPI_WTIME support: gettimeofday
Symbol visibility support: yes
   FT Checkpoint support: yes  (checkpoint thread: no)
           MCA backtrace: execinfo (MCA v2.0, API v2.0, Component v1.4.3)
              MCA memory: ptmalloc2 (MCA v2.0, API v2.0, Component v1.4.3)
           MCA paffinity: linux (MCA v2.0, API v2.0, Component v1.4.3)
               MCA carto: auto_detect (MCA v2.0, API v2.0, Component v1.4.3)
               MCA carto: file (MCA v2.0, API v2.0, Component v1.4.3)
           MCA maffinity: first_use (MCA v2.0, API v2.0, Component v1.4.3)
           MCA maffinity: libnuma (MCA v2.0, API v2.0, Component v1.4.3)
               MCA timer: linux (MCA v2.0, API v2.0, Component v1.4.3)
         MCA installdirs: env (MCA v2.0, API v2.0, Component v1.4.3)
         MCA installdirs: config (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA crs: none (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA dpm: orte (MCA v2.0, API v2.0, Component v1.4.3)
              MCA pubsub: orte (MCA v2.0, API v2.0, Component v1.4.3)
           MCA allocator: basic (MCA v2.0, API v2.0, Component v1.4.3)
           MCA allocator: bucket (MCA v2.0, API v2.0, Component v1.4.3)
                MCA coll: basic (MCA v2.0, API v2.0, Component v1.4.3)
                MCA coll: hierarch (MCA v2.0, API v2.0, Component v1.4.3)
                MCA coll: inter (MCA v2.0, API v2.0, Component v1.4.3)
                MCA coll: self (MCA v2.0, API v2.0, Component v1.4.3)
                MCA coll: sm (MCA v2.0, API v2.0, Component v1.4.3)
                MCA coll: sync (MCA v2.0, API v2.0, Component v1.4.3)
                MCA coll: tuned (MCA v2.0, API v2.0, Component v1.4.3)
                  MCA io: romio (MCA v2.0, API v2.0, Component v1.4.3)
               MCA mpool: fake (MCA v2.0, API v2.0, Component v1.4.3)
               MCA mpool: rdma (MCA v2.0, API v2.0, Component v1.4.3)
               MCA mpool: sm (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA pml: cm (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA pml: crcpw (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA pml: csum (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA pml: ob1 (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA pml: v (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA bml: r2 (MCA v2.0, API v2.0, Component v1.4.3)
              MCA rcache: vma (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA btl: ofud (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA btl: openib (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA btl: self (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA btl: sm (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA btl: tcp (MCA v2.0, API v2.0, Component v1.4.3)
                MCA topo: unity (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA osc: pt2pt (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA osc: rdma (MCA v2.0, API v2.0, Component v1.4.3)
                MCA crcp: bkmrk (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA iof: hnp (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA iof: orted (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA iof: tool (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA oob: tcp (MCA v2.0, API v2.0, Component v1.4.3)
                MCA odls: default (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA ras: slurm (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA ras: tm (MCA v2.0, API v2.0, Component v1.4.3)
               MCA rmaps: load_balance (MCA v2.0, API v2.0, Component v1.4.3)
               MCA rmaps: rank_file (MCA v2.0, API v2.0, Component v1.4.3)
               MCA rmaps: round_robin (MCA v2.0, API v2.0, Component v1.4.3)
               MCA rmaps: seq (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA rml: ftrm (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA rml: oob (MCA v2.0, API v2.0, Component v1.4.3)
              MCA routed: binomial (MCA v2.0, API v2.0, Component v1.4.3)
              MCA routed: direct (MCA v2.0, API v2.0, Component v1.4.3)
              MCA routed: linear (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA plm: rsh (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA plm: slurm (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA plm: tm (MCA v2.0, API v2.0, Component v1.4.3)
               MCA snapc: full (MCA v2.0, API v2.0, Component v1.4.3)
               MCA filem: rsh (MCA v2.0, API v2.0, Component v1.4.3)
              MCA errmgr: default (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA ess: env (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA ess: hnp (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA ess: singleton (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA ess: slurm (MCA v2.0, API v2.0, Component v1.4.3)
                 MCA ess: tool (MCA v2.0, API v2.0, Component v1.4.3)
             MCA grpcomm: bad (MCA v2.0, API v2.0, Component v1.4.3)
             MCA grpcomm: basic (MCA v2.0, API v2.0, Component v1.4.3)

ubuntu@ip-172-31-40-91:/aclib$ sudo find / -iname "*mpi_f77*"
/usr/lib/libmpi_f77.so
/usr/lib/openmpi/lib/libmpi_f77.so
/usr/lib/openmpi/lib/libmpi_f77.a
/usr/lib/openmpi/lib/libmpi_f77.la
/usr/lib/openmpi/lib/libmpi_f77.so.0.0.1
/usr/lib/libmpi_f77.so.0
/usr/lib/libmpi_f77.so.0.0.1

ubuntu@ip-172-31-40-91:/aclib$ ls -la /usr/lib/openmpi/lib/
total 12276
drwxr-xr-x 3 root root    4096 Jan 23 22:51 .
drwxr-xr-x 4 root root    4096 Jan 23 22:51 ..
lrwxrwxrwx 1 root root      25 Mar 29  2012 libmca_common_sm.so -> libmca_common_sm.so.1.0.0
-rw-r--r-- 1 root root   10464 Mar 29  2012 libmca_common_sm.so.1.0.0
-rw-r--r-- 1 root root 4273554 Mar 29  2012 libmpi.a
-rw-r--r-- 1 root root  937384 Mar 29  2012 libmpi_cxx.a
-rw-r--r-- 1 root root     975 Mar 29  2012 libmpi_cxx.la
lrwxrwxrwx 1 root root      19 Mar 29  2012 libmpi_cxx.so -> libmpi_cxx.so.0.0.1
-rw-r--r-- 1 root root  106024 Mar 29  2012 libmpi_cxx.so.0.0.1
-rw-r--r-- 1 root root  697884 Mar 29  2012 libmpi_f77.a
-rw-r--r-- 1 root root     975 Mar 29  2012 libmpi_f77.la
lrwxrwxrwx 1 root root      19 Mar 29  2012 libmpi_f77.so -> libmpi_f77.so.0.0.1
-rw-r--r-- 1 root root  209336 Mar 29  2012 libmpi_f77.so.0.0.1
-rw-r--r-- 1 root root   22406 Mar 29  2012 libmpi_f90.a
-rw-r--r-- 1 root root     975 Mar 29  2012 libmpi_f90.la
lrwxrwxrwx 1 root root      19 Mar 29  2012 libmpi_f90.so -> libmpi_f90.so.0.0.1
-rw-r--r-- 1 root root   14200 Mar 29  2012 libmpi_f90.so.0.0.1
-rw-r--r-- 1 root root     947 Mar 29  2012 libmpi.la
lrwxrwxrwx 1 root root      15 Mar 29  2012 libmpi.so -> libmpi.so.0.0.2
-rw-r--r-- 1 root root  684792 Mar 29  2012 libmpi.so.0.0.2
-rw-r--r-- 1 root root    1382 Mar 29  2012 libopenmpi_malloc.a
-rw-r--r-- 1 root root    1024 Mar 29  2012 libopenmpi_malloc.la
lrwxrwxrwx 1 root root      26 Mar 29  2012 libopenmpi_malloc.so -> libopenmpi_malloc.so.0.0.0
-rw-r--r-- 1 root root    5960 Mar 29  2012 libopenmpi_malloc.so.0.0.0
-rw-r--r-- 1 root root  939048 Mar 29  2012 libopen-pal.a
-rw-r--r-- 1 root root     982 Mar 29  2012 libopen-pal.la
lrwxrwxrwx 1 root root      20 Mar 29  2012 libopen-pal.so -> libopen-pal.so.0.0.0
-rw-r--r-- 1 root root  340200 Mar 29  2012 libopen-pal.so.0.0.0
-rw-r--r-- 1 root root 1399562 Mar 29  2012 libopen-rte.a
-rw-r--r-- 1 root root     982 Mar 29  2012 libopen-rte.la
lrwxrwxrwx 1 root root      20 Mar 29  2012 libopen-rte.so -> libopen-rte.so.0.0.0
-rw-r--r-- 1 root root  312384 Mar 29  2012 libopen-rte.so.0.0.0
-rw-r--r-- 1 root root  219926 Mar 29  2012 libotf.a
-rw-r--r-- 1 root root     890 Mar 29  2012 libotf.la
-rw-r--r-- 1 root root  348408 Mar 29  2012 libvt.a
-rw-r--r-- 1 root root  106062 Mar 29  2012 libvt.fmpi.a
-rw-r--r-- 1 root root  524672 Mar 29  2012 libvt.mpi.a
-rw-r--r-- 1 root root  425398 Mar 29  2012 libvt.omp.a
-rw-r--r-- 1 root root  601202 Mar 29  2012 libvt.ompi.a
-rw-r--r-- 1 root root  298767 Mar 29  2012 mpi.mod
drwxr-xr-x 2 root root    4096 Jan 23 22:51 openmpi

ubuntu@ip-172-31-40-91:/aclib$ sudo ln -s /usr/lib/openmpi/lib/libmpi_f77.so

ubuntu@ip-172-31-40-91:/aclib$ ls -la
total 8
drwxr-xr-x  2 root root 4096 Jan 23 23:26 .
drwxr-xr-x 24 root root 4096 Jan 23 22:54 ..
lrwxrwxrwx  1 root root   19 Jan 23 23:08 libblas.so -> /usr/lib/libblas.so
lrwxrwxrwx  1 root root   48 Jan 23 23:07 libgfortran.so -> /usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.so
lrwxrwxrwx  1 root root   34 Jan 23 23:15 liblapack.so.3gf.0 -> /usr/lib/lapack/liblapack.so.3gf.0
lrwxrwxrwx  1 root root   34 Jan 23 23:26 libmpi_f77.so -> /usr/lib/openmpi/lib/libmpi_f77.so
lrwxrwxrwx  1 root root   39 Jan 23 23:19 libopenblas.so.0 -> /usr/lib/openblas-base/libopenblas.so.0
lrwxrwxrwx  1 root root   25 Jan 23 23:17 libscalapack-openmpi.so.1 -> libscalapack-openmpi.so.1

ubuntu@ip-172-31-40-91:/aclib$ rm libscalapack-openmpi.so.1 
rm: cannot remove `libscalapack-openmpi.so.1': Permission denied

ubuntu@ip-172-31-40-91:/aclib$ sudo rm libscalapack-openmpi.so.1 

ubuntu@ip-172-31-40-91:/aclib$ sudo find / -iname "*scalap*"
/usr/share/doc/libscalapack-mpi-dev
/usr/share/doc/libscalapack-mpi1
/usr/lib/libscalapack-openmpi.a
/usr/lib/libscalapack-openmpi.so.1.8.0
/usr/lib/libscalapack-openmpi.so.1
/usr/lib/libscalapack-openmpi.so
/var/lib/dpkg/info/libscalapack-mpi1.postinst
/var/lib/dpkg/info/libscalapack-mpi1.shlibs
/var/lib/dpkg/info/libscalapack-mpi1.list
/var/lib/dpkg/info/libscalapack-mpi-dev.md5sums
/var/lib/dpkg/info/libscalapack-mpi1.postrm
/var/lib/dpkg/info/libscalapack-mpi-dev.list
/var/lib/dpkg/info/libscalapack-mpi1.md5sums
/var/cache/apt/archives/libscalapack-mpi-dev_1.8.0-7build1_amd64.deb
/var/cache/apt/archives/libscalapack-mpi1_1.8.0-7build1_amd64.deb

ubuntu@ip-172-31-40-91:/aclib$ sudo ln -s /usr/lib/libscalapack-openmpi.so

ubuntu@ip-172-31-40-91:/aclib$ ls -la
total 8
drwxr-xr-x  2 root root 4096 Jan 23 23:30 .
drwxr-xr-x 24 root root 4096 Jan 23 22:54 ..
lrwxrwxrwx  1 root root   19 Jan 23 23:08 libblas.so -> /usr/lib/libblas.so
lrwxrwxrwx  1 root root   48 Jan 23 23:07 libgfortran.so -> /usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.so
lrwxrwxrwx  1 root root   34 Jan 23 23:15 liblapack.so.3gf.0 -> /usr/lib/lapack/liblapack.so.3gf.0
lrwxrwxrwx  1 root root   34 Jan 23 23:26 libmpi_f77.so -> /usr/lib/openmpi/lib/libmpi_f77.so
lrwxrwxrwx  1 root root   39 Jan 23 23:19 libopenblas.so.0 -> /usr/lib/openblas-base/libopenblas.so.0
lrwxrwxrwx  1 root root   32 Jan 23 23:30 libscalapack-openmpi.so -> /usr/lib/libscalapack-openmpi.so

ubuntu@ip-172-31-40-91:/aclib$ sudo mkdir nice

ubuntu@ip-172-31-40-91:/aclib$ cd nice

ubuntu@ip-172-31-40-91:/aclib/nice$ ln -s ../libblas.so
ln: failed to create symbolic link `./libblas.so': Permission denied

ubuntu@ip-172-31-40-91:/aclib/nice$ sudo ln -s ../libblas.so

ubuntu@ip-172-31-40-91:/aclib/nice$ sudo ln -s ../libopenblas.so.0 libblas.so
ln: failed to create symbolic link `libblas.so': File exists

ubuntu@ip-172-31-40-91:/aclib/nice$ sudo rm libblas.so 

ubuntu@ip-172-31-40-91:/aclib/nice$ sudo su -

root@ip-172-31-40-91:~# ls -la
total 20
drwx------  3 root root 4096 Jan 23 22:35 .
drwxr-xr-x 24 root root 4096 Jan 23 22:54 ..
-rw-r--r--  1 root root 3106 Apr 19  2012 .bashrc
-rw-r--r--  1 root root  140 Apr 19  2012 .profile
drwx------  2 root root 4096 Jan 23 22:35 .ssh

root@ip-172-31-40-91:~# pwd
/root

root@ip-172-31-40-91:~# cd /aclib/

root@ip-172-31-40-91:/aclib# cd nice/

root@ip-172-31-40-91:/aclib/nice# ls -la
total 8
drwxr-xr-x 2 root root 4096 Jan 23 23:32 .
drwxr-xr-x 3 root root 4096 Jan 23 23:31 ..

root@ip-172-31-40-91:/aclib/nice# ln -s ../
libblas.so               liblapack.so.3gf.0       libopenblas.so.0         nice/
libgfortran.so           libmpi_f77.so            libscalapack-openmpi.so  

root@ip-172-31-40-91:/aclib/nice# ln -s ../libopenblas.so.0 libblas.so

root@ip-172-31-40-91:/aclib/nice# ln -s ../libopenblas.so.0 liblapack.so

root@ip-172-31-40-91:/aclib/nice# ln -s ../libscalapack-openmpi.so libscalapack.so

root@ip-172-31-40-91:/aclib/nice# ln -s ../libscalapack-openmpi.so libblacs.so

root@ip-172-31-40-91:/aclib/nice# ln -s ../libmpi_f77.so 

root@ip-172-31-40-91:/aclib/nice# ln -s ../libgfortran.so 

root@ip-172-31-40-91:/aclib/nice# ls -la
total 8
drwxr-xr-x 2 root root 4096 Jan 23 23:42 .
drwxr-xr-x 3 root root 4096 Jan 23 23:31 ..
lrwxrwxrwx 1 root root   26 Jan 23 23:41 libblacs.so -> ../libscalapack-openmpi.so
lrwxrwxrwx 1 root root   19 Jan 23 23:40 libblas.so -> ../libopenblas.so.0
lrwxrwxrwx 1 root root   17 Jan 23 23:42 libgfortran.so -> ../libgfortran.so
lrwxrwxrwx 1 root root   19 Jan 23 23:40 liblapack.so -> ../libopenblas.so.0
lrwxrwxrwx 1 root root   16 Jan 23 23:41 libmpi_f77.so -> ../libmpi_f77.so
lrwxrwxrwx 1 root root   26 Jan 23 23:41 libscalapack.so -> ../libscalapack-openmpi.so

root@ip-172-31-40-91:/aclib/nice# ls -la ..
total 12
drwxr-xr-x  3 root root 4096 Jan 23 23:31 .
drwxr-xr-x 24 root root 4096 Jan 23 22:54 ..
lrwxrwxrwx  1 root root   19 Jan 23 23:08 libblas.so -> /usr/lib/libblas.so
lrwxrwxrwx  1 root root   48 Jan 23 23:07 libgfortran.so -> /usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.so
lrwxrwxrwx  1 root root   34 Jan 23 23:15 liblapack.so.3gf.0 -> /usr/lib/lapack/liblapack.so.3gf.0
lrwxrwxrwx  1 root root   34 Jan 23 23:26 libmpi_f77.so -> /usr/lib/openmpi/lib/libmpi_f77.so
lrwxrwxrwx  1 root root   39 Jan 23 23:19 libopenblas.so.0 -> /usr/lib/openblas-base/libopenblas.so.0
lrwxrwxrwx  1 root root   32 Jan 23 23:30 libscalapack-openmpi.so -> /usr/lib/libscalapack-openmpi.so
drwxr-xr-x  2 root root 4096 Jan 23 23:42 nice

root@ip-172-31-40-91:/aclib/nice# ls -la /usr/lib/libblas.so
lrwxrwxrwx 1 root root 28 Jan 23 22:52 /usr/lib/libblas.so -> /etc/alternatives/libblas.so
root@ip-172-31-40-91:/aclib/nice# 
root@ip-172-31-40-91:/aclib/nice# 
root@ip-172-31-40-91:/aclib/nice# cd ..
root@ip-172-31-40-91:/aclib# find / -iname "libconfi*"
/usr/share/doc-base/libconfig8
/usr/share/info/libconfig.info.gz
/usr/share/doc/libconfig8
/usr/share/doc/libconfig8-dev
/usr/share/doc/libconfig8-dev/libconfig.pdf.gz
/usr/lib/pkgconfig/libconfig.pc
/usr/lib/libconfig.so.8
/usr/lib/libconfig.a
/usr/lib/libconfig.so.8.0.0
/usr/lib/libconfig.so
/usr/include/libconfig.h
/var/lib/dpkg/info/libconfig8.list
/var/lib/dpkg/info/libconfig8.symbols
/var/lib/dpkg/info/libconfig8.shlibs
/var/lib/dpkg/info/libconfig8.postinst
/var/lib/dpkg/info/libconfig8-dev.md5sums
/var/lib/dpkg/info/libconfig8.md5sums
/var/lib/dpkg/info/libconfig8.postrm
/var/lib/dpkg/info/libconfig8-dev.list
/var/cache/apt/archives/libconfig8_1.3.2-2ubuntu2_amd64.deb
/var/cache/apt/archives/libconfig8-dev_1.3.2-2ubuntu2_amd64.deb

root@ip-172-31-40-91:/aclib# ln -s /usr/lib/libconfig.so

root@ip-172-31-40-91:/aclib# cd nice

root@ip-172-31-40-91:/aclib/nice# ln ../libconfig.so 

root@ip-172-31-40-91:/aclib/nice# ls -la
total 8
drwxr-xr-x 2 root root 4096 Jan 23 23:45 .
drwxr-xr-x 3 root root 4096 Jan 23 23:45 ..
lrwxrwxrwx 1 root root   26 Jan 23 23:41 libblacs.so -> ../libscalapack-openmpi.so
lrwxrwxrwx 1 root root   19 Jan 23 23:40 libblas.so -> ../libopenblas.so.0
lrwxrwxrwx 2 root root   21 Jan 23 23:45 libconfig.so -> /usr/lib/libconfig.so
lrwxrwxrwx 1 root root   17 Jan 23 23:42 libgfortran.so -> ../libgfortran.so
lrwxrwxrwx 1 root root   19 Jan 23 23:40 liblapack.so -> ../libopenblas.so.0
lrwxrwxrwx 1 root root   16 Jan 23 23:41 libmpi_f77.so -> ../libmpi_f77.so
lrwxrwxrwx 1 root root   26 Jan 23 23:41 libscalapack.so -> ../libscalapack-openmpi.so

root@ip-172-31-40-91:/aclib/nice# Write failed: Broken pipe

ps-MacBook-Air:~ pi$ ping www.google.com
ping: cannot resolve www.google.com: Unknown host
ps-MacBook-Air:~ pi$ 
ps-MacBook-Air:~ pi$ scp -r -i ~/Downloads/EC2_free_keypair.pem ~/Dev/HRTF/acousto_pi ubuntu@ec2-54-200-77-138.us-west-2.compute.amazonaws.com:/home/ubuntu
.DS_Store                                                                             100%   12KB  12.0KB/s   00:00    
aclocal.m4                                                                            100%   41KB  40.9KB/s   00:00    
:
:
:
100% 1330     1.3KB/s   00:00    
tst.txt                                                                               100%   19KB  19.4KB/s   00:00    
tst_out.txt                                                                           100% 3610     3.5KB/s   00:00    

ps-MacBook-Air:~ pi$ ssh -v -i ~/Downloads/EC2_free_keypair.pem ubuntu@ec2-54-200-77-138.us-west-2.compute.amazonaws.com
OpenSSH_6.2p2, OSSLShim 0.9.8r 8 Dec 2011
debug1: Reading configuration data /Users/pi/.ssh/config
debug1: Reading configuration data /etc/ssh_config
debug1: /etc/ssh_config line 20: Applying options for *
debug1: Connecting to ec2-54-200-77-138.us-west-2.compute.amazonaws.com [54.200.77.138] port 22.
debug1: Connection established.
debug1: identity file /Users/pi/Downloads/EC2_free_keypair.pem type -1
debug1: identity file /Users/pi/Downloads/EC2_free_keypair.pem-cert type -1
debug1: Enabling compatibility mode for protocol 2.0
debug1: Local version string SSH-2.0-OpenSSH_6.2
debug1: Remote protocol version 2.0, remote software version OpenSSH_5.9p1 Debian-5ubuntu1.1
debug1: match: OpenSSH_5.9p1 Debian-5ubuntu1.1 pat OpenSSH_5*
debug1: SSH2_MSG_KEXINIT sent
debug1: SSH2_MSG_KEXINIT received
debug1: kex: server->client aes128-ctr hmac-md5 none
debug1: kex: client->server aes128-ctr hmac-md5 none
debug1: SSH2_MSG_KEX_DH_GEX_REQUEST(1024<1024<8192) sent
debug1: expecting SSH2_MSG_KEX_DH_GEX_GROUP
debug1: SSH2_MSG_KEX_DH_GEX_INIT sent
debug1: expecting SSH2_MSG_KEX_DH_GEX_REPLY
debug1: Server host key: RSA b6:31:33:a2:15:e8:64:e7:ff:62:26:b3:e3:99:1b:06
debug1: Host 'ec2-54-200-77-138.us-west-2.compute.amazonaws.com' is known and matches the RSA host key.
debug1: Found key in /Users/pi/.ssh/known_hosts:5
debug1: ssh_rsa_verify: signature correct
debug1: SSH2_MSG_NEWKEYS sent
debug1: expecting SSH2_MSG_NEWKEYS
debug1: SSH2_MSG_NEWKEYS received
debug1: Roaming not allowed by server
debug1: SSH2_MSG_SERVICE_REQUEST sent
debug1: SSH2_MSG_SERVICE_ACCEPT received
debug1: Authentications that can continue: publickey
debug1: Next authentication method: publickey
debug1: Trying private key: /Users/pi/Downloads/EC2_free_keypair.pem
debug1: read PEM private key done: type RSA
debug1: Authentication succeeded (publickey).
Authenticated to ec2-54-200-77-138.us-west-2.compute.amazonaws.com ([54.200.77.138]:22).
debug1: channel 0: new [client-session]
debug1: Requesting no-more-sessions@openssh.com
debug1: Entering interactive session.
debug1: Sending environment.
debug1: Sending env LANG = en_GB.UTF-8
Welcome to Ubuntu 12.04.3 LTS (GNU/Linux 3.2.0-54-virtual x86_64)

 * Documentation:  https://help.ubuntu.com/

  System information as of Fri Jan 24 01:26:39 UTC 2014

  System load:  0.06              Processes:           64
  Usage of /:   15.6% of 7.87GB   Users logged in:     1
  Memory usage: 45%               IP address for eth0: 172.31.40.91
  Swap usage:   0%

  Graph this data and manage this system at https://landscape.canonical.com/

  Get cloud support with Ubuntu Advantage Cloud Guest:
    http://www.ubuntu.com/business/services/cloud

  Use Juju to deploy your cloud instances and workloads:
    https://juju.ubuntu.com/#cloud-precise

Last login: Thu Jan 23 22:43:54 2014 from cpc2-oxfd18-2-0-cust90.4-3.cable.virginm.net

ubuntu@ip-172-31-40-91:~$ ls -la
total 32
drwxr-xr-x  5 ubuntu ubuntu 4096 Jan 24 01:16 .
drwxr-xr-x  3 root   root   4096 Oct  3 07:06 ..
drwxr-xr-x 12 ubuntu ubuntu 4096 Jan 24 01:26 acousto_pi
-rw-r--r--  1 ubuntu ubuntu  220 Apr  3  2012 .bash_logout
-rw-r--r--  1 ubuntu ubuntu 3486 Apr  3  2012 .bashrc
drwx------  2 ubuntu ubuntu 4096 Jan 23 22:43 .cache
-rw-r--r--  1 ubuntu ubuntu  675 Apr  3  2012 .profile
drwx------  2 ubuntu ubuntu 4096 Jan 23 22:35 .ssh
-rw-r--r--  1 ubuntu ubuntu    0 Jan 23 22:46 .sudo_as_admin_successful

ubuntu@ip-172-31-40-91:~$ sudo su -

root@ip-172-31-40-91:~# apt-get install libtool
Reading package lists... Done
Building dependency tree       
Reading state information... Done
The following extra packages will be installed:
  autotools-dev libltdl-dev libltdl7
Suggested packages:
  libtool-doc autoconf automaken gcj
The following NEW packages will be installed:
  autotools-dev libltdl-dev libltdl7 libtool
0 upgraded, 4 newly installed, 0 to remove and 61 not upgraded.
Need to get 585 kB of archives.
After this operation, 2,967 kB of additional disk space will be used.
Do you want to continue [Y/n]? y
Get:1 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main libltdl7 amd64 2.4.2-1ubuntu1 [37.6 kB]
Get:2 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main autotools-dev all 20120210.1ubuntu1 [42.4 kB]
Get:3 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main libltdl-dev amd64 2.4.2-1ubuntu1 [202 kB]
Get:4 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main libtool amd64 2.4.2-1ubuntu1 [302 kB]
Fetched 585 kB in 0s (2,907 kB/s)
Selecting previously unselected package libltdl7.
(Reading database ... 51838 files and directories currently installed.)
Unpacking libltdl7 (from .../libltdl7_2.4.2-1ubuntu1_amd64.deb) ...
Selecting previously unselected package autotools-dev.
Unpacking autotools-dev (from .../autotools-dev_20120210.1ubuntu1_all.deb) ...
Selecting previously unselected package libltdl-dev.
Unpacking libltdl-dev (from .../libltdl-dev_2.4.2-1ubuntu1_amd64.deb) ...
Selecting previously unselected package libtool.
Unpacking libtool (from .../libtool_2.4.2-1ubuntu1_amd64.deb) ...
Processing triggers for man-db ...
Setting up libltdl7 (2.4.2-1ubuntu1) ...
Setting up autotools-dev (20120210.1ubuntu1) ...
Setting up libltdl-dev (2.4.2-1ubuntu1) ...
Setting up libtool (2.4.2-1ubuntu1) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place

root@ip-172-31-40-91:~# apt-get install autoconf
Reading package lists... Done
Building dependency tree       
Reading state information... Done
The following extra packages will be installed:
  automake m4
Suggested packages:
  autoconf2.13 autoconf-archive gnu-standards autoconf-doc gettext
The following NEW packages will be installed:
  autoconf automake m4
0 upgraded, 3 newly installed, 0 to remove and 61 not upgraded.
Need to get 1,332 kB of archives.
After this operation, 3,851 kB of additional disk space will be used.
Do you want to continue [Y/n]? y
Get:1 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main m4 amd64 1.4.16-2ubuntu1 [200 kB]
Get:2 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main autoconf all 2.68-1ubuntu2 [560 kB]
Get:3 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/main automake all 1:1.11.3-1ubuntu2 [571 kB]
Fetched 1,332 kB in 0s (4,954 kB/s)
Selecting previously unselected package m4.
(Reading database ... 51934 files and directories currently installed.)
Unpacking m4 (from .../m4_1.4.16-2ubuntu1_amd64.deb) ...
Selecting previously unselected package autoconf.
Unpacking autoconf (from .../autoconf_2.68-1ubuntu2_all.deb) ...
Selecting previously unselected package automake.
Unpacking automake (from .../automake_1%3a1.11.3-1ubuntu2_all.deb) ...
Processing triggers for install-info ...
Processing triggers for man-db ...
Setting up m4 (1.4.16-2ubuntu1) ...
Setting up autoconf (2.68-1ubuntu2) ...
Setting up automake (1:1.11.3-1ubuntu2) ...
update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode.

root@ip-172-31-40-91:~# pwd
/root

root@ip-172-31-40-91:~# cd /
root@ip-172-31-40-91:/# ls
aclib  boot  etc   initrd.img  lib64       media  opt   root  sbin     srv  tmp  var
bin    dev   home  lib         lost+found  mnt    proc  run   selinux  sys  usr  vmlinuz

root@ip-172-31-40-91:/# cd home
root@ip-172-31-40-91:/home# ls
ubuntu
root@ip-172-31-40-91:/home# cd ubuntu/
root@ip-172-31-40-91:/home/ubuntu# ls
acousto_pi
root@ip-172-31-40-91:/home/ubuntu# cd acousto_pi/

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# ls -laR /aclib/
/aclib/:
total 12
drwxr-xr-x  3 root root 4096 Jan 23 23:45 .
drwxr-xr-x 24 root root 4096 Jan 23 22:54 ..
lrwxrwxrwx  1 root root   19 Jan 23 23:08 libblas.so -> /usr/lib/libblas.so
lrwxrwxrwx  2 root root   21 Jan 23 23:45 libconfig.so -> /usr/lib/libconfig.so
lrwxrwxrwx  1 root root   48 Jan 23 23:07 libgfortran.so -> /usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.so
lrwxrwxrwx  1 root root   34 Jan 23 23:15 liblapack.so.3gf.0 -> /usr/lib/lapack/liblapack.so.3gf.0
lrwxrwxrwx  1 root root   34 Jan 23 23:26 libmpi_f77.so -> /usr/lib/openmpi/lib/libmpi_f77.so
lrwxrwxrwx  1 root root   39 Jan 23 23:19 libopenblas.so.0 -> /usr/lib/openblas-base/libopenblas.so.0
lrwxrwxrwx  1 root root   32 Jan 23 23:30 libscalapack-openmpi.so -> /usr/lib/libscalapack-openmpi.so
drwxr-xr-x  2 root root 4096 Jan 23 23:45 nice

/aclib/nice:
total 8
drwxr-xr-x 2 root root 4096 Jan 23 23:45 .
drwxr-xr-x 3 root root 4096 Jan 23 23:45 ..
lrwxrwxrwx 1 root root   26 Jan 23 23:41 libblacs.so -> ../libscalapack-openmpi.so
lrwxrwxrwx 1 root root   19 Jan 23 23:40 libblas.so -> ../libopenblas.so.0
lrwxrwxrwx 2 root root   21 Jan 23 23:45 libconfig.so -> /usr/lib/libconfig.so
lrwxrwxrwx 1 root root   17 Jan 23 23:42 libgfortran.so -> ../libgfortran.so
lrwxrwxrwx 1 root root   19 Jan 23 23:40 liblapack.so -> ../libopenblas.so.0
lrwxrwxrwx 1 root root   16 Jan 23 23:41 libmpi_f77.so -> ../libmpi_f77.so
lrwxrwxrwx 1 root root   26 Jan 23 23:41 libscalapack.so -> ../libscalapack-openmpi.so

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# history 
    1* apt-get install 
    2  apt-get install autoconf
    3  pwd
    4  cd ~
    5  ls
    6  cd /
    7  ls
    8  cd home
    9  ls
   10  cd ubuntu/
   11  ls
   12  cd acousto_pi/
   13  ls -lar /aclib/
   14  ls -laR /aclib/
   15  history 

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# ./configure --with-libs=/aclib/nice
configure: * * * * * * *   A C O U S T O configure.ac for Acousto ver. 1.6 * * * * * * * 
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... no
checking whether make supports nested variables... no
configure: --> Checking for programs... 
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking for style of include used by make... none
checking dependency style of gcc... none
checking whether make sets $(MAKE)... (cached) no
checking for robodoc... false
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
configure: --> Compatible host detected: x86_64-unknown-linux-gnu 
configure: -->  Searching /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin for MPICC compiler... 
checking for mpicc... /usr/bin/mpicc
configure: -->  ... Found at: /usr/bin/mpicc 
checking for config_init in -lconfig... yes
configure: -->  libconfig found 
configure: Checking user-supplied libs for ATLAS... 
checking for ATL_zgemm in -latlas... no
configure: ... Could not find Atlas! 
checking for dgemm_ in -lblas... no
configure: error: Failed to auto-locate BLAS 

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# nm /aclib/nice/libblas.so | grep "dgemm_"
nm: /aclib/nice/libblas.so: no symbols

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# nm /aclib/nice/libblas.so
nm: /aclib/nice/libblas.so: no symbols

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# ls -la /aclib/nice/libblas.so
lrwxrwxrwx 1 root root 19 Jan 23 23:40 /aclib/nice/libblas.so -> ../libopenblas.so.0

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# ls -la /aclib/libopenblas.so.0 
lrwxrwxrwx 1 root root 39 Jan 23 23:19 /aclib/libopenblas.so.0 -> /usr/lib/openblas-base/libopenblas.so.0

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# ls -la /usr/lib/openblas-base/libopenblas.so.0
-rw-r--r-- 1 root root 19493200 Jul 28  2011 /usr/lib/openblas-base/libopenblas.so.0

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# nm /usr/lib/openblas-base/libopenblas.so.0
nm: /usr/lib/openblas-base/libopenblas.so.0: no symbols

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# size /usr/lib/openblas-base/libopenblas.so.0
   text       data        bss        dec        hex    filename
19405301      81168      33976    19520445    129dbbd    /usr/lib/openblas-base/libopenblas.so.0

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# ls
aclocal.m4      aux_build  config.log    configure.ac_orig  freq2imp.py  Makefile.am  NEWS     README     tst_out.txt
AUTHORS         blender    configure     COPYING            INSTALL      Makefile.in  php      src        tst.txt
autom4te.cache  ChangeLog  configure.ac  doc                m4           mysql        pi_head  tmp_build

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# vi configure.ac

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# cat configure.ac | grep "gfortran"
                  FORTRAN_libs="-lgfortran"

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# autoreconf -if

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# 

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# ./configure --with-libs=/aclib/nice
configure: * * * * * * *   A C O U S T O configure.ac for Acousto ver. 1.6 * * * * * * * 
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... no
configure: --> Checking for programs... 
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... none
checking dependency style of gcc... none
checking whether gcc and cc understand -c and -o together... yes
checking whether make sets $(MAKE)... (cached) no
checking for robodoc... false
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
configure: --> Compatible host detected: x86_64-unknown-linux-gnu 
configure: -->  Searching /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin for MPICC compiler... 
checking for mpicc... /usr/bin/mpicc
configure: -->  ... Found at: /usr/bin/mpicc 
checking for config_init in -lconfig... yes
configure: -->  libconfig found 
configure: Checking user-supplied libs for ATLAS... 
checking for ATL_zgemm in -latlas... no
configure: ... Could not find Atlas! 
checking for dgemm_ in -lblas... yes
configure: -->  Auto-Located BLAS 
checking for zgegv_ in -llapack... no
configure: error: Failed to find LAPACK 

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# ls /aclib/nice/
libblacs.so  libblas.so  libconfig.so  libgfortran.so  liblapack.so  libmpi_f77.so  libscalapack.so

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# ls -la /aclib/nice/liblapack.so 
lrwxrwxrwx 1 root root 19 Jan 23 23:40 /aclib/nice/liblapack.so -> ../libopenblas.so.0

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# nm -D /usr/lib/openblas-base/libopenblas.so.0 | grep "zgegv_"

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# ls /usr/lib/openblas-base
libopenblas.a  libopenblas.so  libopenblas.so.0

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# ls -la /usr/lib/openblas-base
total 49312
drwxr-xr-x  2 root root     4096 Jan 23 22:52 .
drwxr-xr-x 56 root root    12288 Jan 23 22:53 ..
-rw-r--r--  1 root root 30981552 Jul 28  2011 libopenblas.a
lrwxrwxrwx  1 root root       16 Jul 28  2011 libopenblas.so -> libopenblas.so.0
-rw-r--r--  1 root root 19493200 Jul 28  2011 libopenblas.so.0

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# nm -D /usr/lib/openblas-base/libopenblas.a | grep "zgegv_"
nm: saxpy.o: No symbols

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# find / -iname "liblapack*"
/usr/share/doc/liblapack3gf
/usr/lib/lapack/liblapack.so.3gf
/usr/lib/lapack/liblapack.so.3gf.0
/usr/lib/liblapack.so.3gf
/etc/alternatives/liblapack.so.3gf
/var/lib/dpkg/alternatives/liblapack.so.3gf
/var/lib/dpkg/info/liblapack3gf.list
/var/lib/dpkg/info/liblapack3gf.prerm
/var/lib/dpkg/info/liblapack3gf.shlibs
/var/lib/dpkg/info/liblapack3gf.postrm
/var/lib/dpkg/info/liblapack3gf.templates
/var/lib/dpkg/info/liblapack3gf.postinst
/var/lib/dpkg/info/liblapack3gf.md5sums
/var/lib/dpkg/info/liblapack3gf.config
/var/cache/apt/archives/liblapack3gf_3.3.1-1_amd64.deb
/aclib/liblapack.so.3gf.0
/aclib/nice/liblapack.so

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# mv /aclib/nice/liblapack.so /aclib/nice/_liblapack.so

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# ln -s /etc/alternatives/liblapack.so.3gf /aclib/nice/liblapack.so

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# nm -D /aclib/nice/liblapack.so | grep "zgegv_"
00000000006ea700 T zgegv_

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# mv /aclib/nice/libblas.so /aclib/nice/_libblas.so

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# find / -iname "libblas*"
/usr/lib/libblas.so
/usr/lib/libblas.so.3gf
/usr/lib/libblas.a
/etc/alternatives/libblas.so
/etc/alternatives/libblas.so.3gf
/etc/alternatives/libblas.a
/var/lib/dpkg/alternatives/libblas.so
/var/lib/dpkg/alternatives/libblas.so.3gf
/aclib/libblas.so

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# ln -s /etc/alternatives/libblas.so /aclib/nice/libblas.so

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# ./configure --with-libs=/aclib/nice
configure: * * * * * * *   A C O U S T O configure.ac for Acousto ver. 1.6 * * * * * * * 
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... no
configure: --> Checking for programs... 
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... none
checking dependency style of gcc... none
checking whether gcc and cc understand -c and -o together... yes
checking whether make sets $(MAKE)... (cached) no
checking for robodoc... false
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
configure: --> Compatible host detected: x86_64-unknown-linux-gnu 
configure: -->  Searching /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin for MPICC compiler... 
checking for mpicc... /usr/bin/mpicc
configure: -->  ... Found at: /usr/bin/mpicc 
checking for config_init in -lconfig... yes
configure: -->  libconfig found 
configure: Checking user-supplied libs for ATLAS... 
checking for ATL_zgemm in -latlas... no
configure: ... Could not find Atlas! 
checking for dgemm_ in -lblas... yes
configure: -->  Auto-Located BLAS 
checking for zgegv_ in -llapack... yes
configure: -->  Got LAPACK 
checking for MPI_Init in -lmpi_f77... yes
checking for MPI_Init in -lmpi_mpifh... no
configure: --> Setting MPI_FORTRAN_libs: -lmpi_f77 
configure: -->  Attempting to locate BLACS... 
checking for Cblacs_pinfo in -lblacsCinit... no
checking for Cblacs_pinfo in -lblacsC... no
checking for Cblacs_pinfo in -lmpiblacsCinit... no
checking for Cblacs_pinfo in -lblacsCinit_MPI... no
checking for Cblacs_pinfo in -lblacsCinit-openmpi... yes
checking for sl_init_ in -lscalapack... yes
configure: -->  scaLapack found & working 
configure: --> --------------------------
configure: --> -------- Summary ---------
configure: --> --------------------------
configure: --> LIBCONFIG       : -lconfig
configure: --> FORTRAN         : -lgfortran
configure: --> BLAS            : -lblas
configure: --> LAPACK          : -llapack
configure: --> MPI FORTRAN     : -lmpi_f77
configure: --> BLACS           : -lblacsCinit-openmpi -lblacs-openmpi -lblacsCinit-openmpi
configure: --> SCALAPACK       : -lscalapack
configure: --> MYSQL_LIBS      : 
configure: --> CFLAGS          : -g -O2
configure: --> LDFLAGS         :  -L/aclib/nice
configure: --> --------------------------
./configure: line 4561: 0: command not found
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: executing depfiles commands
root@ip-172-31-40-91:/home/ubuntu/acousto_pi# 
root@ip-172-31-40-91:/home/ubuntu/acousto_pi# 
root@ip-172-31-40-91:/home/ubuntu/acousto_pi# 
root@ip-172-31-40-91:/home/ubuntu/acousto_pi# sed -n '4500,4600p' ./configure
                                    CFLAGS="$CFLAGS -D_MYSQL_";
                                    MySQL_libs="-lmysqlclient";
                                    have_MySQL="1"

fi

fi

# Wrapping up
{ $as_echo "$as_me:${as_lineno-$LINENO}: --> --------------------------" >&5
$as_echo "$as_me: --> --------------------------" >&6;}
{ $as_echo "$as_me:${as_lineno-$LINENO}: --> -------- Summary ---------" >&5
$as_echo "$as_me: --> -------- Summary ---------" >&6;}
{ $as_echo "$as_me:${as_lineno-$LINENO}: --> --------------------------" >&5
$as_echo "$as_me: --> --------------------------" >&6;}
{ $as_echo "$as_me:${as_lineno-$LINENO}: --> LIBCONFIG       : $libConfig_LIBS" >&5
$as_echo "$as_me: --> LIBCONFIG       : $libConfig_LIBS" >&6;}
{ $as_echo "$as_me:${as_lineno-$LINENO}: --> FORTRAN         : $FORTRAN_libs" >&5
$as_echo "$as_me: --> FORTRAN         : $FORTRAN_libs" >&6;}
{ $as_echo "$as_me:${as_lineno-$LINENO}: --> BLAS            : $BLAS_libs" >&5
$as_echo "$as_me: --> BLAS            : $BLAS_libs" >&6;}
{ $as_echo "$as_me:${as_lineno-$LINENO}: --> LAPACK          : $LAPACK_libs" >&5
$as_echo "$as_me: --> LAPACK          : $LAPACK_libs" >&6;}
{ $as_echo "$as_me:${as_lineno-$LINENO}: --> MPI FORTRAN     : $MPI_FORTRAN_libs" >&5
$as_echo "$as_me: --> MPI FORTRAN     : $MPI_FORTRAN_libs" >&6;}
{ $as_echo "$as_me:${as_lineno-$LINENO}: --> BLACS           : $BLACS_libs" >&5
$as_echo "$as_me: --> BLACS           : $BLACS_libs" >&6;}
{ $as_echo "$as_me:${as_lineno-$LINENO}: --> SCALAPACK       : $SCALAPACK_libs" >&5
$as_echo "$as_me: --> SCALAPACK       : $SCALAPACK_libs" >&6;}
{ $as_echo "$as_me:${as_lineno-$LINENO}: --> MYSQL_LIBS      : $MYSQL_LIBS" >&5
$as_echo "$as_me: --> MYSQL_LIBS      : $MYSQL_LIBS" >&6;}
{ $as_echo "$as_me:${as_lineno-$LINENO}: --> CFLAGS          : $CFLAGS" >&5
$as_echo "$as_me: --> CFLAGS          : $CFLAGS" >&6;}
{ $as_echo "$as_me:${as_lineno-$LINENO}: --> LDFLAGS         : $LDFLAGS" >&5
$as_echo "$as_me: --> LDFLAGS         : $LDFLAGS" >&6;}
{ $as_echo "$as_me:${as_lineno-$LINENO}: --> --------------------------" >&5
$as_echo "$as_me: --> --------------------------" >&6;}

#AC_MSG_NOTICE( --> [ATLAS           : $ATLAS_LIBS]) <--these have got amalgamated into BLAS_libs
#AC_MSG_NOTICE( --> [MPI_VER         : $mpi_version])

# π trying to avoid using capitals, however this saves me having to edit attachment points in /src/Makefile.am
math_libs="$SCALAPACK_libs $BLACS_libs $LAPACK_libs $BLAS_libs $FORTRAN_libs -lm $MPI_FORTRAN_libs"

# ----------------------------------------------
#  AUTOCONF substitutions
# ----------------------------------------------

#AC_SUBST([CFGPARSE_DIR]) <-- 'grep -r "CFGPARSE_DIR" .' suggests this is never used, same for ROBODOC
#AC_SUBST([ROBODOC])
#AM_CONDITIONAL(ROBODOC_FOUND, test x$robodoc_pathfile != xfalse)

 if $have_MySQL; then
  have_MySQL_TRUE=
  have_MySQL_FALSE='#'
else
  have_MySQL_TRUE='#'
  have_MySQL_FALSE=
fi

cat >confcache <<\_ACEOF
# This file is a shell script that caches the results of configure
# tests run on this system so they can be shared between configure
# scripts and configure runs, see configure's option --config-cache.
# It is not useful on other systems.  If it contains results you don't
# want to keep, you may remove or edit it.
#
# config.status only pays attention to the cache file if you give it
# the --recheck option to rerun configure.
#
# `ac_cv_env_foo' variables (set or unset) will be overridden when
# loading this file, other *unset* `ac_cv_foo' will be assigned the
# following values.

_ACEOF

# The following way of writing the cache mishandles newlines in values,
# but we know of no workaround that is simple, portable, and efficient.
# So, we kill variables containing newlines.
# Ultrix sh set writes to stderr and can't be redirected directly,
# and sets the high bit in the cache file unless we assign to the vars.
(
  for ac_var in `(set) 2>&1 | sed -n 's/^\([a-zA-Z_][a-zA-Z0-9_]*\)=.*/\1/p'`; do
    eval ac_val=\$$ac_var
    case $ac_val in #(
    *${as_nl}*)
      case $ac_var in #(
      *_cv_*) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cache variable $ac_var contains a newline" >&5
$as_echo "$as_me: WARNING: cache variable $ac_var contains a newline" >&2;} ;;
      esac
      case $ac_var in #(
root@ip-172-31-40-91:/home/ubuntu/acousto_pi# sed -n '4558,4568p' ./configure
#AC_SUBST([ROBODOC])
#AM_CONDITIONAL(ROBODOC_FOUND, test x$robodoc_pathfile != xfalse)

 if $have_MySQL; then
  have_MySQL_TRUE=
  have_MySQL_FALSE='#'
else
  have_MySQL_TRUE='#'
  have_MySQL_FALSE=
fi

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# vi ./configure.ac

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# vi ./configure.ac

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# autoreconf -if
src/Makefile.am:4: have_MySQL does not appear in AM_CONDITIONAL
autoreconf: automake failed with exit status: 1

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# vi ./configure.ac

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# autoreconf -if

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# ./configure --with-libs=/aclib/nice
configure: * * * * * * *   A C O U S T O configure.ac for Acousto ver. 1.6 * * * * * * * 
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... no
configure: --> Checking for programs... 
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... none
checking dependency style of gcc... none
checking whether gcc and cc understand -c and -o together... yes
checking whether make sets $(MAKE)... (cached) no
checking for robodoc... false
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
configure: --> Compatible host detected: x86_64-unknown-linux-gnu 
configure: -->  Searching /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin for MPICC compiler... 
checking for mpicc... /usr/bin/mpicc
configure: -->  ... Found at: /usr/bin/mpicc 
checking for config_init in -lconfig... yes
configure: -->  libconfig found 
configure: Checking user-supplied libs for ATLAS... 
checking for ATL_zgemm in -latlas... no
configure: ... Could not find Atlas! 
checking for dgemm_ in -lblas... yes
configure: -->  Auto-Located BLAS 
checking for zgegv_ in -llapack... yes
configure: -->  Got LAPACK 
checking for MPI_Init in -lmpi_f77... yes
checking for MPI_Init in -lmpi_mpifh... no
configure: --> Setting MPI_FORTRAN_libs: -lmpi_f77 
configure: -->  Attempting to locate BLACS... 
checking for Cblacs_pinfo in -lblacsCinit... no
checking for Cblacs_pinfo in -lblacsC... no
checking for Cblacs_pinfo in -lmpiblacsCinit... no
checking for Cblacs_pinfo in -lblacsCinit_MPI... no
checking for Cblacs_pinfo in -lblacsCinit-openmpi... yes
checking for sl_init_ in -lscalapack... yes
configure: -->  scaLapack found & working 
configure: --> --------------------------
configure: --> -------- Summary ---------
configure: --> --------------------------
configure: --> LIBCONFIG       : -lconfig
configure: --> FORTRAN         : -lgfortran
configure: --> BLAS            : -lblas
configure: --> LAPACK          : -llapack
configure: --> MPI FORTRAN     : -lmpi_f77
configure: --> BLACS           : -lblacsCinit-openmpi -lblacs-openmpi -lblacsCinit-openmpi
configure: --> SCALAPACK       : -lscalapack
configure: --> MYSQL_LIBS      : 
configure: --> CFLAGS          : -g -O2
configure: --> LDFLAGS         :  -L/aclib/nice
configure: --> --------------------------
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: executing depfiles commands

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# make
The program 'make' is currently not installed.  You can install it by typing:
apt-get install make

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# wibble
No command 'wibble' found, did you mean:
 Command 'wobble' from package 'emboss' (universe)
wibble: command not found

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# apt-get install make
Reading package lists... Done
Building dependency tree       
Reading state information... Done
Suggested packages:
  make-doc
The following NEW packages will be installed:
  make
0 upgraded, 1 newly installed, 0 to remove and 61 not upgraded.
Need to get 119 kB of archives.
After this operation, 324 kB of additional disk space will be used.
Get:1 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise-updates/main make amd64 3.81-8.1ubuntu1.1 [119 kB]
Fetched 119 kB in 0s (1,028 kB/s)
Selecting previously unselected package make.
(Reading database ... 52213 files and directories currently installed.)
Unpacking make (from .../make_3.81-8.1ubuntu1.1_amd64.deb) ...
Processing triggers for man-db ...
Setting up make (3.81-8.1ubuntu1.1) ...
root@ip-172-31-40-91:/home/ubuntu/acousto_pi# make
Making all in src
make[1]: Entering directory `/home/ubuntu/acousto_pi/src'
source='main.c' object='acousto-main.o' libtool=no \
    DEPDIR=.deps depmode=none /bin/bash ../aux_build/depcomp \
    /usr/bin/mpicc -DPACKAGE_NAME=\"acousto\" -DPACKAGE_TARNAME=\"acousto\" -DPACKAGE_VERSION=\"1.6\" -DPACKAGE_STRING=\"acousto\ 1.6\" -DPACKAGE_BUGREPORT=\"u.iemma@uniroma3.it\" -DPACKAGE_URL=\"\" -DPACKAGE=\"acousto\" -DVERSION=\"1.6\" -I.    -Wall  -g -O2 -c -o acousto-main.o `test -f 'main.c' || echo './'`main.c
main.c: In function ‘main’:
main.c:305:5: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:306:5: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:387:5: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:388:5: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:389:5: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:391:5: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:393:5: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:427:5: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:430:5: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:431:5: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:433:5: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:479:7: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:535:9: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:537:9: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:545:9: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:583:9: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:585:9: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:595:9: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:636:9: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:638:9: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:640:9: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:764:9: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:766:9: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:774:9: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:908:5: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:911:5: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:914:5: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:944:5: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:955:7: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:956:7: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:962:7: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:963:7: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:978:3: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:986:3: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:987:3: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:988:3: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:1012:3: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:1044:5: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:1045:5: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:1046:5: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:1047:5: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:1048:5: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:1049:5: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:1050:5: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:1051:5: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:1100:7: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:1131:11: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:1133:11: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:1167:7: warning: passing argument 3 of ‘config_lookup_int’ from incompatible pointer type [enabled by default]
/usr/include/libconfig.h:235:26: note: expected ‘long int *’ but argument is of type ‘int *’
main.c:145:7: warning: variable ‘mpierr’ set but not used [-Wunused-but-set-variable]
main.c: In function ‘cleanup’:
main.c:1400:25: warning: the comparison will always evaluate as ‘true’ for the address of ‘config’ will never be NULL [-Waddress]
main.c:1397:7: warning: variable ‘nfreq’ set but not used [-Wunused-but-set-variable]
main.c: In function ‘MPI_AcouSTO_structs’:
main.c:1786:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1786:46: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1789:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1789:45: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1792:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1792:46: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1795:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1795:46: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1798:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1798:42: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1801:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1801:45: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1804:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1804:45: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1807:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1807:46: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1810:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1810:45: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1813:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1813:44: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1816:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1816:44: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1819:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1819:46: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1822:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1822:46: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1825:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1825:46: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1828:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1828:46: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1831:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1831:46: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1834:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1834:43: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1837:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1837:46: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1840:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1840:46: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1843:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1843:48: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1846:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1846:48: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1849:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1849:50: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1852:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1852:48: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1855:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1855:48: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1858:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1858:51: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1861:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1861:52: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1864:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1864:52: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1867:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1867:49: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1870:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1870:54: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1873:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1873:54: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1876:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1876:48: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1879:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1879:46: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1882:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1882:49: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1885:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1885:53: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1888:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1888:47: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1891:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1891:59: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1894:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1894:48: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1897:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1897:47: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1911:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1911:42: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1925:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1925:36: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1928:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1928:42: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1931:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c:1931:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
main.c: In function ‘main’:
main.c:445:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
main.c:453:16: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
main.c:460:16: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
main.c:463:18: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
main.c:712:18: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
main.c:722:18: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
main.c:725:20: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
main.c:1323:13: warning: ‘rawtime3’ may be used uninitialized in this function [-Wuninitialized]
main.c:1322:13: warning: ‘rawtime2’ may be used uninitialized in this function [-Wuninitialized]
source='geom.c' object='acousto-geom.o' libtool=no \
    DEPDIR=.deps depmode=none /bin/bash ../aux_build/depcomp \
    /usr/bin/mpicc -DPACKAGE_NAME=\"acousto\" -DPACKAGE_TARNAME=\"acousto\" -DPACKAGE_VERSION=\"1.6\" -DPACKAGE_STRING=\"acousto\ 1.6\" -DPACKAGE_BUGREPORT=\"u.iemma@uniroma3.it\" -DPACKAGE_URL=\"\" -DPACKAGE=\"acousto\" -DVERSION=\"1.6\" -I.    -Wall  -g -O2 -c -o acousto-geom.o `test -f 'geom.c' || echo './'`geom.c
geom.c: In function ‘georeader’:
geom.c:64:18: warning: variable ‘nintt’ set but not used [-Wunused-but-set-variable]
geom.c:64:12: warning: variable ‘nreal’ set but not used [-Wunused-but-set-variable]
source='geom_utils.c' object='acousto-geom_utils.o' libtool=no \
    DEPDIR=.deps depmode=none /bin/bash ../aux_build/depcomp \
    /usr/bin/mpicc -DPACKAGE_NAME=\"acousto\" -DPACKAGE_TARNAME=\"acousto\" -DPACKAGE_VERSION=\"1.6\" -DPACKAGE_STRING=\"acousto\ 1.6\" -DPACKAGE_BUGREPORT=\"u.iemma@uniroma3.it\" -DPACKAGE_URL=\"\" -DPACKAGE=\"acousto\" -DVERSION=\"1.6\" -I.    -Wall  -g -O2 -c -o acousto-geom_utils.o `test -f 'geom_utils.c' || echo './'`geom_utils.c
geom_utils.c: In function ‘build_geoms’:
geom_utils.c:42:25: warning: variable ‘gmshgeom’ set but not used [-Wunused-but-set-variable]
geom_utils.c:41:25: warning: variable ‘nodesgeom’ set but not used [-Wunused-but-set-variable]
geom_utils.c: In function ‘sphere’:
geom_utils.c:503:10: warning: variable ‘i2’ set but not used [-Wunused-but-set-variable]
geom_utils.c:496:13: warning: variable ‘invpi’ set but not used [-Wunused-but-set-variable]
geom_utils.c: In function ‘cylinder’:
geom_utils.c:576:10: warning: variable ‘i2’ set but not used [-Wunused-but-set-variable]
geom_utils.c:568:13: warning: variable ‘invpi’ set but not used [-Wunused-but-set-variable]
geom_utils.c: In function ‘plate’:
geom_utils.c:647:10: warning: variable ‘i2’ set but not used [-Wunused-but-set-variable]
geom_utils.c: In function ‘read_arrays’:
geom_utils.c:379:11: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
geom_utils.c:393:8: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
geom_utils.c:396:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
geom_utils.c:410:12: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
geom_utils.c:413:16: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
geom_utils.c:421:12: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
geom_utils.c:424:16: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
geom_utils.c:468:12: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
geom_utils.c: In function ‘build_gmsh’:
geom_utils.c:186:8: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
geom_utils.c:193:8: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
geom_utils.c:209:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
geom_utils.c:216:14: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
geom_utils.c:250:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
geom_utils.c:253:14: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
geom_utils.c: In function ‘build_nodes’:
geom_utils.c:90:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
geom_utils.c:101:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
source='logger.c' object='acousto-logger.o' libtool=no \
    DEPDIR=.deps depmode=none /bin/bash ../aux_build/depcomp \
    /usr/bin/mpicc -DPACKAGE_NAME=\"acousto\" -DPACKAGE_TARNAME=\"acousto\" -DPACKAGE_VERSION=\"1.6\" -DPACKAGE_STRING=\"acousto\ 1.6\" -DPACKAGE_BUGREPORT=\"u.iemma@uniroma3.it\" -DPACKAGE_URL=\"\" -DPACKAGE=\"acousto\" -DVERSION=\"1.6\" -I.    -Wall  -g -O2 -c -o acousto-logger.o `test -f 'logger.c' || echo './'`logger.c
source='ac_coef_body.c' object='acousto-ac_coef_body.o' libtool=no \
    DEPDIR=.deps depmode=none /bin/bash ../aux_build/depcomp \
    /usr/bin/mpicc -DPACKAGE_NAME=\"acousto\" -DPACKAGE_TARNAME=\"acousto\" -DPACKAGE_VERSION=\"1.6\" -DPACKAGE_STRING=\"acousto\ 1.6\" -DPACKAGE_BUGREPORT=\"u.iemma@uniroma3.it\" -DPACKAGE_URL=\"\" -DPACKAGE=\"acousto\" -DVERSION=\"1.6\" -I.    -Wall  -g -O2 -c -o acousto-ac_coef_body.o `test -f 'ac_coef_body.c' || echo './'`ac_coef_body.c
ac_coef_body.c: In function ‘acoustic_body_coefs’:
ac_coef_body.c:80:36: warning: variable ‘nio’ set but not used [-Wunused-but-set-variable]
ac_coef_body.c:55:8: warning: variable ‘mpi_nelmb’ set but not used [-Wunused-but-set-variable]
ac_coef_body.c:52:14: warning: variable ‘nphib’ set but not used [-Wunused-but-set-variable]
ac_coef_body.c:52:8: warning: variable ‘npsib’ set but not used [-Wunused-but-set-variable]
source='ac_coef_mics.c' object='acousto-ac_coef_mics.o' libtool=no \
    DEPDIR=.deps depmode=none /bin/bash ../aux_build/depcomp \
    /usr/bin/mpicc -DPACKAGE_NAME=\"acousto\" -DPACKAGE_TARNAME=\"acousto\" -DPACKAGE_VERSION=\"1.6\" -DPACKAGE_STRING=\"acousto\ 1.6\" -DPACKAGE_BUGREPORT=\"u.iemma@uniroma3.it\" -DPACKAGE_URL=\"\" -DPACKAGE=\"acousto\" -DVERSION=\"1.6\" -I.    -Wall  -g -O2 -c -o acousto-ac_coef_mics.o `test -f 'ac_coef_mics.c' || echo './'`ac_coef_mics.c
ac_coef_mics.c: In function ‘acoustic_mics_coefs’:
ac_coef_mics.c:81:12: warning: variable ‘ctmp’ set but not used [-Wunused-but-set-variable]
ac_coef_mics.c:78:36: warning: variable ‘nio’ set but not used [-Wunused-but-set-variable]
ac_coef_mics.c:54:8: warning: variable ‘mpi_nelmb’ set but not used [-Wunused-but-set-variable]
ac_coef_mics.c:51:14: warning: variable ‘nphib’ set but not used [-Wunused-but-set-variable]
ac_coef_mics.c:51:8: warning: variable ‘npsib’ set but not used [-Wunused-but-set-variable]
source='solution.c' object='acousto-solution.o' libtool=no \
    DEPDIR=.deps depmode=none /bin/bash ../aux_build/depcomp \
    /usr/bin/mpicc -DPACKAGE_NAME=\"acousto\" -DPACKAGE_TARNAME=\"acousto\" -DPACKAGE_VERSION=\"1.6\" -DPACKAGE_STRING=\"acousto\ 1.6\" -DPACKAGE_BUGREPORT=\"u.iemma@uniroma3.it\" -DPACKAGE_URL=\"\" -DPACKAGE=\"acousto\" -DVERSION=\"1.6\" -I.    -Wall  -g -O2 -c -o acousto-solution.o `test -f 'solution.c' || echo './'`solution.c
solution.c: In function ‘acoustic_solution’:
solution.c:78:14: warning: variable ‘ncntrc’ set but not used [-Wunused-but-set-variable]
solution.c:78:8: warning: variable ‘nelmb’ set but not used [-Wunused-but-set-variable]
solution.c:73:18: warning: variable ‘hfreq’ set but not used [-Wunused-but-set-variable]
solution.c:70:14: warning: variable ‘npsiu’ set but not used [-Wunused-but-set-variable]
solution.c:69:8: warning: variable ‘nfreq’ set but not used [-Wunused-but-set-variable]
solution.c: In function ‘read_acoustic_files’:
solution.c:353:7: warning: variable ‘nphiu’ set but not used [-Wunused-but-set-variable]
solution.c:352:7: warning: variable ‘mpi_ncntr’ set but not used [-Wunused-but-set-variable]
solution.c:350:7: warning: variable ‘nfreq’ set but not used [-Wunused-but-set-variable]
solution.c: In function ‘read_boundary_conditions’:
solution.c:467:7: warning: variable ‘nfreq’ set but not used [-Wunused-but-set-variable]
solution.c: In function ‘printsol_on_master’:
solution.c:708:16: warning: variable ‘nn’ set but not used [-Wunused-but-set-variable]
solution.c:702:13: warning: variable ‘is’ set but not used [-Wunused-but-set-variable]
solution.c:702:10: warning: variable ‘rs’ set but not used [-Wunused-but-set-variable]
solution.c: In function ‘fr_print_pre_mic’:
solution.c:800:11: warning: variable ‘rho_s’ set but not used [-Wunused-but-set-variable]
solution.c:794:10: warning: variable ‘nn’ set but not used [-Wunused-but-set-variable]
solution.c:792:7: warning: variable ‘locRows’ set but not used [-Wunused-but-set-variable]
solution.c: In function ‘condition_number’:
solution.c:857:16: warning: variable ‘locCols’ set but not used [-Wunused-but-set-variable]
solution.c: In function ‘read_solution’:
solution.c:916:12: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
solution.c:919:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
solution.c: In function ‘read_boundary_conditions’:
solution.c:602:14: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
solution.c:613:14: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
solution.c:624:14: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
solution.c:635:14: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
solution.c:650:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
solution.c:669:12: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
solution.c: In function ‘read_acoustic_files’:
solution.c:392:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
solution.c:405:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
solution.c:418:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
solution.c: In function ‘acoustic_solution’:
solution.c:311:19: warning: ‘f’ may be used uninitialized in this function [-Wuninitialized]
source='linsys.c' object='acousto-linsys.o' libtool=no \
    DEPDIR=.deps depmode=none /bin/bash ../aux_build/depcomp \
    /usr/bin/mpicc -DPACKAGE_NAME=\"acousto\" -DPACKAGE_TARNAME=\"acousto\" -DPACKAGE_VERSION=\"1.6\" -DPACKAGE_STRING=\"acousto\ 1.6\" -DPACKAGE_BUGREPORT=\"u.iemma@uniroma3.it\" -DPACKAGE_URL=\"\" -DPACKAGE=\"acousto\" -DVERSION=\"1.6\" -I.    -Wall  -g -O2 -c -o acousto-linsys.o `test -f 'linsys.c' || echo './'`linsys.c
linsys.c: In function ‘solve_linear_system’:
linsys.c:66:7: warning: variable ‘nn’ set but not used [-Wunused-but-set-variable]
linsys.c:62:7: warning: variable ‘itemp’ set but not used [-Wunused-but-set-variable]
linsys.c:58:15: warning: variable ‘locCols’ set but not used [-Wunused-but-set-variable]
source='ac_gmres.c' object='acousto-ac_gmres.o' libtool=no \
    DEPDIR=.deps depmode=none /bin/bash ../aux_build/depcomp \
    /usr/bin/mpicc -DPACKAGE_NAME=\"acousto\" -DPACKAGE_TARNAME=\"acousto\" -DPACKAGE_VERSION=\"1.6\" -DPACKAGE_STRING=\"acousto\ 1.6\" -DPACKAGE_BUGREPORT=\"u.iemma@uniroma3.it\" -DPACKAGE_URL=\"\" -DPACKAGE=\"acousto\" -DVERSION=\"1.6\" -I.    -Wall  -g -O2 -c -o acousto-ac_gmres.o `test -f 'ac_gmres.c' || echo './'`ac_gmres.c
ac_gmres.c: In function ‘gmres’:
ac_gmres.c:103:22: warning: variable ‘d’ set but not used [-Wunused-but-set-variable]
ac_gmres.c:103:19: warning: variable ‘mi’ set but not used [-Wunused-but-set-variable]
ac_gmres.c:103:14: warning: variable ‘mmin’ set but not used [-Wunused-but-set-variable]
ac_gmres.c:103:9: warning: variable ‘mmax’ set but not used [-Wunused-but-set-variable]
ac_gmres.c:102:29: warning: variable ‘normr’ set but not used [-Wunused-but-set-variable]
ac_gmres.c:102:22: warning: variable ‘min_cr’ set but not used [-Wunused-but-set-variable]
ac_gmres.c:102:15: warning: variable ‘max_cr’ set but not used [-Wunused-but-set-variable]
ac_gmres.c:102:12: warning: variable ‘cr’ set but not used [-Wunused-but-set-variable]
ac_gmres.c:99:9: warning: variable ‘nconv’ set but not used [-Wunused-but-set-variable]
ac_gmres.c:82:14: warning: variable ‘itemp’ set but not used [-Wunused-but-set-variable]
ac_gmres.c:55:18: warning: variable ‘mm’ set but not used [-Wunused-but-set-variable]
ac_gmres.c:106:11: warning: ‘f’ may be used uninitialized in this function [-Wuninitialized]
source='math.c' object='acousto-math.o' libtool=no \
    DEPDIR=.deps depmode=none /bin/bash ../aux_build/depcomp \
    /usr/bin/mpicc -DPACKAGE_NAME=\"acousto\" -DPACKAGE_TARNAME=\"acousto\" -DPACKAGE_VERSION=\"1.6\" -DPACKAGE_STRING=\"acousto\ 1.6\" -DPACKAGE_BUGREPORT=\"u.iemma@uniroma3.it\" -DPACKAGE_URL=\"\" -DPACKAGE=\"acousto\" -DVERSION=\"1.6\" -I.    -Wall  -g -O2 -c -o acousto-math.o `test -f 'math.c' || echo './'`math.c
source='integrals.c' object='acousto-integrals.o' libtool=no \
    DEPDIR=.deps depmode=none /bin/bash ../aux_build/depcomp \
    /usr/bin/mpicc -DPACKAGE_NAME=\"acousto\" -DPACKAGE_TARNAME=\"acousto\" -DPACKAGE_VERSION=\"1.6\" -DPACKAGE_STRING=\"acousto\ 1.6\" -DPACKAGE_BUGREPORT=\"u.iemma@uniroma3.it\" -DPACKAGE_URL=\"\" -DPACKAGE=\"acousto\" -DVERSION=\"1.6\" -I.    -Wall  -g -O2 -c -o acousto-integrals.o `test -f 'integrals.c' || echo './'`integrals.c
integrals.c: In function ‘intgba’:
integrals.c:80:12: warning: variable ‘cplt’ set but not used [-Wunused-but-set-variable]
integrals.c:70:11: warning: variable ‘unac’ set but not used [-Wunused-but-set-variable]
source='nrwash.c' object='acousto-nrwash.o' libtool=no \
    DEPDIR=.deps depmode=none /bin/bash ../aux_build/depcomp \
    /usr/bin/mpicc -DPACKAGE_NAME=\"acousto\" -DPACKAGE_TARNAME=\"acousto\" -DPACKAGE_VERSION=\"1.6\" -DPACKAGE_STRING=\"acousto\ 1.6\" -DPACKAGE_BUGREPORT=\"u.iemma@uniroma3.it\" -DPACKAGE_URL=\"\" -DPACKAGE=\"acousto\" -DVERSION=\"1.6\" -I.    -Wall  -g -O2 -c -o acousto-nrwash.o `test -f 'nrwash.c' || echo './'`nrwash.c
nrwash.c: In function ‘eval_phinc’:
nrwash.c:68:16: warning: variable ‘one’ set but not used [-Wunused-but-set-variable]
nrwash.c:68:11: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable]
nrwash.c:59:7: warning: variable ‘npsiu’ set but not used [-Wunused-but-set-variable]
source='matrices.c' object='acousto-matrices.o' libtool=no \
    DEPDIR=.deps depmode=none /bin/bash ../aux_build/depcomp \
    /usr/bin/mpicc -DPACKAGE_NAME=\"acousto\" -DPACKAGE_TARNAME=\"acousto\" -DPACKAGE_VERSION=\"1.6\" -DPACKAGE_STRING=\"acousto\ 1.6\" -DPACKAGE_BUGREPORT=\"u.iemma@uniroma3.it\" -DPACKAGE_URL=\"\" -DPACKAGE=\"acousto\" -DVERSION=\"1.6\" -I.    -Wall  -g -O2 -c -o acousto-matrices.o `test -f 'matrices.c' || echo './'`matrices.c
matrices.c: In function ‘matyfd’:
matrices.c:98:8: warning: variable ‘ierr’ set but not used [-Wunused-but-set-variable]
matrices.c:80:36: warning: variable ‘nio’ set but not used [-Wunused-but-set-variable]
matrices.c:57:8: warning: variable ‘nn’ set but not used [-Wunused-but-set-variable]
matrices.c:48:15: warning: variable ‘bstride’ set but not used [-Wunused-but-set-variable]
matrices.c:42:7: warning: variable ‘nphib’ set but not used [-Wunused-but-set-variable]
matrices.c: In function ‘matyfdc’:
matrices.c:379:8: warning: variable ‘nn’ set but not used [-Wunused-but-set-variable]
matrices.c:331:7: warning: variable ‘cstride’ set but not used [-Wunused-but-set-variable]
matrices.c:325:7: warning: variable ‘nphib’ set but not used [-Wunused-but-set-variable]
source='matutils.c' object='acousto-matutils.o' libtool=no \
    DEPDIR=.deps depmode=none /bin/bash ../aux_build/depcomp \
    /usr/bin/mpicc -DPACKAGE_NAME=\"acousto\" -DPACKAGE_TARNAME=\"acousto\" -DPACKAGE_VERSION=\"1.6\" -DPACKAGE_STRING=\"acousto\ 1.6\" -DPACKAGE_BUGREPORT=\"u.iemma@uniroma3.it\" -DPACKAGE_URL=\"\" -DPACKAGE=\"acousto\" -DVERSION=\"1.6\" -I.    -Wall  -g -O2 -c -o acousto-matutils.o `test -f 'matutils.c' || echo './'`matutils.c
source='pre_mic.c' object='acousto-pre_mic.o' libtool=no \
    DEPDIR=.deps depmode=none /bin/bash ../aux_build/depcomp \
    /usr/bin/mpicc -DPACKAGE_NAME=\"acousto\" -DPACKAGE_TARNAME=\"acousto\" -DPACKAGE_VERSION=\"1.6\" -DPACKAGE_STRING=\"acousto\ 1.6\" -DPACKAGE_BUGREPORT=\"u.iemma@uniroma3.it\" -DPACKAGE_URL=\"\" -DPACKAGE=\"acousto\" -DVERSION=\"1.6\" -I.    -Wall  -g -O2 -c -o acousto-pre_mic.o `test -f 'pre_mic.c' || echo './'`pre_mic.c
pre_mic.c: In function ‘pre_mic’:
pre_mic.c:90:36: warning: variable ‘nio’ set but not used [-Wunused-but-set-variable]
pre_mic.c:83:11: warning: variable ‘ctmp’ set but not used [-Wunused-but-set-variable]
pre_mic.c:74:11: warning: variable ‘psiuval’ set but not used [-Wunused-but-set-variable]
pre_mic.c:63:11: warning: variable ‘rho_s’ set but not used [-Wunused-but-set-variable]
pre_mic.c:50:10: warning: variable ‘nn’ set but not used [-Wunused-but-set-variable]
pre_mic.c:44:23: warning: variable ‘locCRows’ set but not used [-Wunused-but-set-variable]
pre_mic.c:42:7: warning: variable ‘bstride’ set but not used [-Wunused-but-set-variable]
pre_mic.c:41:7: warning: variable ‘mpi_ncntr’ set but not used [-Wunused-but-set-variable]
pre_mic.c:39:7: warning: variable ‘nphib’ set but not used [-Wunused-but-set-variable]
pre_mic.c: In function ‘pre_mic_coef’:
pre_mic.c:364:11: warning: variable ‘psiuval’ set but not used [-Wunused-but-set-variable]
pre_mic.c:353:11: warning: variable ‘rho_s’ set but not used [-Wunused-but-set-variable]
pre_mic.c:342:10: warning: variable ‘nn’ set but not used [-Wunused-but-set-variable]
pre_mic.c:336:23: warning: variable ‘locCRows’ set but not used [-Wunused-but-set-variable]
pre_mic.c:334:7: warning: variable ‘mpi_ncntr’ set but not used [-Wunused-but-set-variable]
pre_mic.c:332:7: warning: variable ‘nphib’ set but not used [-Wunused-but-set-variable]
pre_mic.c: In function ‘print_premic_on_master’:
pre_mic.c:596:11: warning: variable ‘rho_s’ set but not used [-Wunused-but-set-variable]
pre_mic.c:590:10: warning: variable ‘nn’ set but not used [-Wunused-but-set-variable]
pre_mic.c:588:7: warning: variable ‘locRows’ set but not used [-Wunused-but-set-variable]
source='vtkout.c' object='acousto-vtkout.o' libtool=no \
    DEPDIR=.deps depmode=none /bin/bash ../aux_build/depcomp \
    /usr/bin/mpicc -DPACKAGE_NAME=\"acousto\" -DPACKAGE_TARNAME=\"acousto\" -DPACKAGE_VERSION=\"1.6\" -DPACKAGE_STRING=\"acousto\ 1.6\" -DPACKAGE_BUGREPORT=\"u.iemma@uniroma3.it\" -DPACKAGE_URL=\"\" -DPACKAGE=\"acousto\" -DVERSION=\"1.6\" -I.    -Wall  -g -O2 -c -o acousto-vtkout.o `test -f 'vtkout.c' || echo './'`vtkout.c
vtkout.c: In function ‘vtkoutmu2’:
vtkout.c:66:10: warning: variable ‘nn’ set but not used [-Wunused-but-set-variable]
vtkout.c:64:7: warning: variable ‘locRows’ set but not used [-Wunused-but-set-variable]
vtkout.c: In function ‘vtkoutmmesh’:
vtkout.c:230:23: warning: variable ‘cellvrtx’ set but not used [-Wunused-but-set-variable]
vtkout.c:225:10: warning: variable ‘nn’ set but not used [-Wunused-but-set-variable]
vtkout.c:223:7: warning: variable ‘locRows’ set but not used [-Wunused-but-set-variable]
vtkout.c: In function ‘vtkoutb’:
vtkout.c:386:10: warning: variable ‘nn’ set but not used [-Wunused-but-set-variable]
vtkout.c: In function ‘mshoutb’:
vtkout.c:542:10: warning: variable ‘nn’ set but not used [-Wunused-but-set-variable]
vtkout.c: In function ‘mshoutm’:
vtkout.c:793:23: warning: variable ‘cellvrtx’ set but not used [-Wunused-but-set-variable]
vtkout.c:793:13: warning: variable ‘celltype’ set but not used [-Wunused-but-set-variable]
vtkout.c:788:10: warning: variable ‘nn’ set but not used [-Wunused-but-set-variable]
vtkout.c:786:7: warning: variable ‘locRows’ set but not used [-Wunused-but-set-variable]
/usr/bin/mpicc -Wall  -g -O2  -L/aclib/nice -o acousto acousto-main.o acousto-geom.o acousto-geom_utils.o acousto-logger.o acousto-ac_coef_body.o acousto-ac_coef_mics.o acousto-solution.o acousto-linsys.o acousto-ac_gmres.o acousto-math.o acousto-integrals.o acousto-nrwash.o acousto-matrices.o acousto-matutils.o  acousto-pre_mic.o acousto-vtkout.o -lscalapack -lblacsCinit-openmpi -lblacs-openmpi -lblacsCinit-openmpi -llapack -lblas -lgfortran -lm -lmpi_f77 -lconfig   
make[1]: Leaving directory `/home/ubuntu/acousto_pi/src'
make[1]: Entering directory `/home/ubuntu/acousto_pi'
make[1]: Nothing to be done for `all-am'.
make[1]: Leaving directory `/home/ubuntu/acousto_pi'

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# make install
Making install in src
make[1]: Entering directory `/home/ubuntu/acousto_pi/src'
make[2]: Entering directory `/home/ubuntu/acousto_pi/src'
test -z "/usr/local/bin" || /bin/mkdir -p "/usr/local/bin"
  /usr/bin/install -c acousto '/usr/local/bin'
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/ubuntu/acousto_pi/src'
make[1]: Leaving directory `/home/ubuntu/acousto_pi/src'
make[1]: Entering directory `/home/ubuntu/acousto_pi'
make[2]: Entering directory `/home/ubuntu/acousto_pi'
make[2]: Nothing to be done for `install-exec-am'.
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/ubuntu/acousto_pi'
make[1]: Leaving directory `/home/ubuntu/acousto_pi'

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# acousto
2014-01-24 02:19:42 INFO  [1/1] ****************    Job started     ***************
2014-01-24 02:19:42 INFO  [1/1] Program started
2014-01-24 02:19:42 ERROR [1/1] An input file must be specified with option -f <input file>

root@ip-172-31-40-91:/home/ubuntu/acousto_pi# cd doc/tutorials/Sphere_Monopole/

root@ip-172-31-40-91:/home/ubuntu/acousto_pi/doc/tutorials/Sphere_Monopole# acousto -f 
acousto.chief.mesh          compare.gpl                 gmsh_geom_meshes/           sphere_source_gmsh.cfg
acousto.mics1.5.mesh        .DS_Store                   pro-ch0-pc1-gmr-2014-01-17/ 
acousto.sources             exact_solutions_at1.5/      sphere_source.cfg           

root@ip-172-31-40-91:/home/ubuntu/acousto_pi/doc/tutorials/Sphere_Monopole# acousto -f sphere_source.cfg 
2014-01-24 02:20:13 INFO  [1/1] ****************    Job started     ***************
2014-01-24 02:20:13 INFO  [1/1] Program started
2014-01-24 02:20:13 INFO  [1/1] Creating directory /home/ubuntu/acousto_pi/doc/tutorials/Sphere_Monopole/pro-ch0-pc1-gmr-2014-01-24
2014-01-24 02:20:13 INFO  [1/1] Output files will be stored in folder pro-ch0-pc1-gmr-2014-01-24
2014-01-24 02:20:13 INFO  [1/1]   under path /home/ubuntu/acousto_pi/doc/tutorials/Sphere_Monopole
2014-01-24 02:20:13 INFO  [1/1] Warning: Grid size was automatically determined as 1 x 1
2014-01-24 02:20:13 INFO  [1/1]          This choice is not optimal for large problems and a high number of processes.
2014-01-24 02:20:13 INFO  [1/1]          It may also lead to distribution inconsistencies. 
2014-01-24 02:20:13 INFO  [1/1] Mics file appears to be in AcouSTO native format
2014-01-24 02:20:13 INFO  [1/1]     Number of mics is read from config file
2014-01-24 02:20:13 INFO  [1/1] n geometries=1
2014-01-24 02:20:13 INFO  [1/1] GMRES Solver chosen
2014-01-24 02:20:13 INFO  [1/1]  Initializing process grid [1 x 1]
2014-01-24 02:20:13 INFO  [1/1]  Successfully initialized process grid [1 x 1]
2014-01-24 02:20:13 INFO  [1/1] ****************    Memory Estimate    ***************
2014-01-24 02:20:13 INFO  [1/1] Consider this as a rough estimate. 
2014-01-24 02:20:13 INFO  [1/1] Memory actually allocated heavily depends on 
2014-01-24 02:20:13 INFO  [1/1]  the particular combination of parameters used  
2014-01-24 02:20:13 INFO  [1/1] Estimated Memory for Each Process: 53.551088 Mb
2014-01-24 02:20:13 INFO  [1/1] ****************    Memory Estimate-end    ***********
2014-01-24 02:20:13 INFO  [1/1] Starting Geometry     Module
2014-01-24 02:20:14 INFO  [1/1] Starting Coefficients Module
2014-01-24 02:20:14 INFO  [1/1] Starting Body Coefficients Module
2014-01-24 02:20:14 INFO  [1/1] Completed 10 % 
2014-01-24 02:20:14 INFO  [1/1] Completed 20 % 
2014-01-24 02:20:14 INFO  [1/1] Completed 30 % 
2014-01-24 02:20:14 INFO  [1/1] Completed 40 % 
2014-01-24 02:20:14 INFO  [1/1] Completed 50 % 
2014-01-24 02:20:14 INFO  [1/1] Completed 60 % 
2014-01-24 02:20:14 INFO  [1/1] Completed 70 % 
2014-01-24 02:20:14 INFO  [1/1] Completed 80 % 
2014-01-24 02:20:14 INFO  [1/1] Completed 90 % 
2014-01-24 02:20:14 INFO  [1/1] Completed 100 % 
2014-01-24 02:20:14 INFO  [1/1] Body Coefficients Module End
2014-01-24 02:20:14 INFO  [1/1] Starting Mics Coefficients Module
2014-01-24 02:20:14 INFO  [1/1] Completed 10 % 
2014-01-24 02:20:14 INFO  [1/1] Completed 20 % 
2014-01-24 02:20:14 INFO  [1/1] Completed 30 % 
2014-01-24 02:20:14 INFO  [1/1] Completed 40 % 
2014-01-24 02:20:14 INFO  [1/1] Completed 50 % 
2014-01-24 02:20:14 INFO  [1/1] Completed 60 % 
2014-01-24 02:20:14 INFO  [1/1] Completed 70 % 
2014-01-24 02:20:14 INFO  [1/1] Completed 80 % 
2014-01-24 02:20:14 INFO  [1/1] Completed 90 % 
2014-01-24 02:20:14 INFO  [1/1] Completed 100 % 
2014-01-24 02:20:14 INFO  [1/1] Mics Coefficients Module End
2014-01-24 02:20:14 INFO  [1/1] Starting Solution     Module
2014-01-24 02:20:14 INFO  [1/1] ifreq = 0, s=(0.000000 +i 1077.566280), f=171.500000 Hz
2014-01-24 02:20:14 INFO  [1/1] Boundary conditions: transferring 1176 bytes to nodes
2014-01-24 02:20:14 INFO  [1/1] Starting GMRES iterations: maxit=1, restart=24
2014-01-24 02:20:14 INFO  [1/1]  GMRES: 24 iterations, residual:0.000000
2014-01-24 02:20:14 INFO  [1/1] Broadcasting solution (24 complex values)
2014-01-24 02:20:14 INFO  [1/1]  Solution sent to all nodes
2014-01-24 02:20:14 INFO  [1/1] total run time=0.337040 seconds
2014-01-24 02:20:14 INFO  [1/1] ---------------------------------
2014-01-24 02:20:14 INFO  [1/1]  Run details
2014-01-24 02:20:14 INFO  [1/1] ---------------------------------
2014-01-24 02:20:14 INFO  [1/1]  title    = pro-ch0-pc1-gmr
2014-01-24 02:20:14 INFO  [1/1]  owner    = umby
2014-01-24 02:20:14 INFO  [1/1]  cfg path = /home/ubuntu/acousto_pi/doc/tutorials/Sphere_Monopole
2014-01-24 02:20:14 INFO  [1/1]  cfg      = sphere_source.cfg
2014-01-24 02:20:14 INFO  [1/1]  start    = Fri 2014-01-24 02:20:13 UTC
2014-01-24 02:20:14 INFO  [1/1]  end      = Fri 2014-01-24 02:20:14 UTC
2014-01-24 02:20:14 INFO  [1/1]  elapsed  = 0.337040 s
2014-01-24 02:20:14 INFO  [1/1]   for body coefs = 0.072131 s
2014-01-24 02:20:14 INFO  [1/1]   for mics coefs = 0.142132 s
2014-01-24 02:20:14 INFO  [1/1]   for solution   = 0.079032 s
2014-01-24 02:20:14 INFO  [1/1]  no. of procs.   = 1
2014-01-24 02:20:14 INFO  [1/1] ****************    Job finished    ***************
2014-01-24 02:20:14 INFO  [1/1] Total Allocated Memory: 3.013680 Mb
2014-01-24 02:20:14 INFO  [1/1] cleanup...
2014-01-24 02:20:14 INFO  [1/1] End

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